Human Gene SGSH (ENST00000326317.11_7) from GENCODE V47lift37
  Description: N-sulfoglucosamine sulfohydrolase, transcript variant 3 (from RefSeq NM_001352922.2)
Gencode Transcript: ENST00000326317.11_7
Gencode Gene: ENSG00000181523.13_16
Transcript (Including UTRs)
   Position: hg19 chr17:78,183,075-78,194,132 Size: 11,058 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr17:78,184,251-78,194,112 Size: 9,862 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:78,183,075-78,194,132)mRNA (may differ from genome)Protein (502 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SPHM_HUMAN
DESCRIPTION: RecName: Full=N-sulphoglucosamine sulphohydrolase; EC=3.10.1.1; AltName: Full=Sulfoglucosamine sulfamidase; AltName: Full=Sulphamidase; Flags: Precursor;
CATALYTIC ACTIVITY: N-sulfo-D-glucosamine + H(2)O = D-glucosamine + sulfate.
COFACTOR: Binds 1 calcium ion per subunit (By similarity).
SUBCELLULAR LOCATION: Lysosome.
PTM: The conversion to 3-oxoalanine (also known as C- formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity (By similarity).
DISEASE: Defects in SGSH are the cause of mucopolysaccharidosis type 3A (MPS3A) [MIM:252900]; also known as Sanfilippo syndrome A. MPS3A is a severe form of mucopolysaccharidosis type 3, an autosomal recessive lysosomal storage disease due to impaired degradation of heparan sulfate. MPS3 is characterized by severe central nervous system degeneration, but only mild somatic disease. Onset of clinical features usually occurs between 2 and 6 years; severe neurologic degeneration occurs in most patients between 6 and 10 years of age, and death occurs typically during the second or third decade of life. MPS3A is characterized by earlier onset, rapid progression of symptoms and shorter survival.
SIMILARITY: Belongs to the sulfatase family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/IDS";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SGSH
Diseases sorted by gene-association score: mucopolysaccharidosis type iiia* (1691), mucopolysaccharidosis iii* (439), lysosomal storage disease (20), mucopolysaccharidosis-plus syndrome (12), kluver-bucy syndrome (11), mannosidosis (9), multiple sulfatase deficiency (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 24.42 RPKM in Adrenal Gland
Total median expression: 362.85 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -1.5020-0.075 Picture PostScript Text
3' UTR -491.201176-0.418 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR017849 - Alkaline_Pase-like_a/b/a
IPR017850 - Alkaline_phosphatase_core
IPR000917 - Sulfatase
IPR024607 - Sulfatase_CS

Pfam Domains:
PF00884 - Sulfatase
PF01663 - Type I phosphodiesterase / nucleotide pyrophosphatase
PF16347 - Domain of unknown function (DUF4976)

SCOP Domains:
53649 - Alkaline phosphatase-like

ModBase Predicted Comparative 3D Structure on P51688
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0008484 sulfuric ester hydrolase activity
GO:0016250 N-sulfoglucosamine sulfohydrolase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006027 glycosaminoglycan catabolic process
GO:0008152 metabolic process
GO:0030200 heparan sulfate proteoglycan catabolic process

Cellular Component:
GO:0005764 lysosome
GO:0043202 lysosomal lumen
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LF209442 - JP 2014500723-A/16945: Polycomb-Associated Non-Coding RNAs.
LF328568 - JP 2014500723-A/136071: Polycomb-Associated Non-Coding RNAs.
AB209900 - Homo sapiens mRNA for N-sulfoglucosamine sulfohydrolase (sulfamidase) variant protein.
AK095969 - Homo sapiens cDNA FLJ38650 fis, clone HHDPC2007775, highly similar to N-sulphoglucosamine sulphohydrolase precursor (EC 3.10.1.1).
BC047318 - Homo sapiens N-sulfoglucosamine sulfohydrolase, mRNA (cDNA clone MGC:51931 IMAGE:5226903), complete cds.
U30894 - Human N-sulphoglucosamine sulphohydrolase mRNA, complete cds.
JD225709 - Sequence 206733 from Patent EP1572962.
LF328569 - JP 2014500723-A/136072: Polycomb-Associated Non-Coding RNAs.
JD556647 - Sequence 537671 from Patent EP1572962.
JD556646 - Sequence 537670 from Patent EP1572962.
JD556646 - Sequence 537670 from Patent EP1572962.
JD556647 - Sequence 537671 from Patent EP1572962.
JD221361 - Sequence 202385 from Patent EP1572962.
JD556645 - Sequence 537669 from Patent EP1572962.
JD498988 - Sequence 480012 from Patent EP1572962.
JD068671 - Sequence 49695 from Patent EP1572962.
JD290871 - Sequence 271895 from Patent EP1572962.
JD483437 - Sequence 464461 from Patent EP1572962.
JD479300 - Sequence 460324 from Patent EP1572962.
JD478229 - Sequence 459253 from Patent EP1572962.
JD099889 - Sequence 80913 from Patent EP1572962.
JD324237 - Sequence 305261 from Patent EP1572962.
JD075790 - Sequence 56814 from Patent EP1572962.
JD279818 - Sequence 260842 from Patent EP1572962.
JD165776 - Sequence 146800 from Patent EP1572962.
AK291257 - Homo sapiens cDNA FLJ76291 complete cds, highly similar to Homo sapiens N-sulfoglucosamine sulfohydrolase (sulfamidase) (SGSH), mRNA.
JD188116 - Sequence 169140 from Patent EP1572962.
JD135119 - Sequence 116143 from Patent EP1572962.
JD252465 - Sequence 233489 from Patent EP1572962.
AK222890 - Homo sapiens mRNA for N-sulfoglucosamine sulfohydrolase (sulfamidase) variant, clone: HRC01709.
KJ897549 - Synthetic construct Homo sapiens clone ccsbBroadEn_06943 SGSH gene, encodes complete protein.
KR711040 - Synthetic construct Homo sapiens clone CCSBHm_00019374 SGSH (SGSH) mRNA, encodes complete protein.
KR711041 - Synthetic construct Homo sapiens clone CCSBHm_00019395 SGSH (SGSH) mRNA, encodes complete protein.
KR711042 - Synthetic construct Homo sapiens clone CCSBHm_00019405 SGSH (SGSH) mRNA, encodes complete protein.
KR711043 - Synthetic construct Homo sapiens clone CCSBHm_00019430 SGSH (SGSH) mRNA, encodes complete protein.
CU690396 - Synthetic construct Homo sapiens gateway clone IMAGE:100021496 5' read SGSH mRNA.
AK304706 - Homo sapiens cDNA FLJ52913 complete cds, weakly similar to N-sulphoglucosamine sulphohydrolase precursor (EC 3.10.1.1).
AK309927 - Homo sapiens cDNA, FLJ99968.
JD458308 - Sequence 439332 from Patent EP1572962.
JD458440 - Sequence 439464 from Patent EP1572962.
MA564145 - JP 2018138019-A/136071: Polycomb-Associated Non-Coding RNAs.
MA564146 - JP 2018138019-A/136072: Polycomb-Associated Non-Coding RNAs.
MA445019 - JP 2018138019-A/16945: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P51688 (Reactome details) participates in the following event(s):

R-HSA-1678708 SGSH hydrolyses Heparan sulfate chain(2)
R-HSA-2090043 SGSH hydrolyses Heparan sulfate chain(7)
R-HSA-2024096 HS-GAG degradation
R-HSA-1638091 Heparan sulfate/heparin (HS-GAG) metabolism
R-HSA-1630316 Glycosaminoglycan metabolism
R-HSA-71387 Metabolism of carbohydrates
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8K5E2, ENST00000326317.1, ENST00000326317.10, ENST00000326317.2, ENST00000326317.3, ENST00000326317.4, ENST00000326317.5, ENST00000326317.6, ENST00000326317.7, ENST00000326317.8, ENST00000326317.9, HSS, NM_001352922, P51688, SPHM_HUMAN, uc317sar.1, uc317sar.2
UCSC ID: ENST00000326317.11_7
RefSeq Accession: NM_000199.5
Protein: P51688 (aka SPHM_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene SGSH:
mps3 (Mucopolysaccharidosis Type III)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.