Human Gene SEC14L2 (ENST00000615189.5_5) from GENCODE V47lift37
  Description: SEC14 like lipid binding 2, transcript variant 1 (from RefSeq NM_012429.5)
Gencode Transcript: ENST00000615189.5_5
Gencode Gene: ENSG00000100003.18_9
Transcript (Including UTRs)
   Position: hg19 chr22:30,793,007-30,821,291 Size: 28,285 Total Exon Count: 12 Strand: +
Coding Region
   Position: hg19 chr22:30,793,106-30,818,396 Size: 25,291 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:30,793,007-30,821,291)mRNA (may differ from genome)Protein (403 aa)
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: S14L2_HUMAN
DESCRIPTION: RecName: Full=SEC14-like protein 2; AltName: Full=Alpha-tocopherol-associated protein; Short=TAP; Short=hTAP; AltName: Full=Squalene transfer protein; AltName: Full=Supernatant protein factor; Short=SPF;
FUNCTION: Carrier protein. Binds to some hydrophobic molecules and promotes their transfer between the different cellular sites. Binds with high affinity to alpha-tocopherol. Also binds with a weaker affinity to other tocopherols and to tocotrienols. May have a transcriptional activatory activity via its association with alpha-tocopherol. Probably recognizes and binds some squalene structure, suggesting that it may regulate cholesterol biosynthesis by increasing the transfer of squalene to a metabolic active pool in the cell.
SUBUNIT: Monomer (By similarity).
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Cytoplasmic in absence of alpha-tocopherol, and nuclear in presence of alpha- tocopherol.
TISSUE SPECIFICITY: Widely expressed. Strong expression in liver, brain and prostate.
DEVELOPMENTAL STAGE: Low expression in fetal tissues.
SIMILARITY: Contains 1 CRAL-TRIO domain.
SIMILARITY: Contains 1 GOLD domain.
SEQUENCE CAUTION: Sequence=BAA86500.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SEC14L2
Diseases sorted by gene-association score: retinitis pigmentosa 41 (4), ataxia with isolated vitamin e deficiency (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -35.4099-0.358 Picture PostScript Text
3' UTR -1092.102895-0.377 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001071 - CRAL-bd_toc_tran
IPR001251 - CRAL-TRIO_dom
IPR011074 - CRAL/TRIO_N_dom
IPR009038 - GOLD

Pfam Domains:
PF00650 - CRAL/TRIO domain
PF13716 - Divergent CRAL/TRIO domain

SCOP Domains:
46938 - CRAL/TRIO N-terminal domain
101576 - Supernatant protein factor (SPF), C-terminal domain
52087 - CRAL/TRIO domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1O6U - X-ray MuPIT 1OLM - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O76054
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005543 phospholipid binding
GO:0008289 lipid binding
GO:0008431 vitamin E binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0045540 regulation of cholesterol biosynthetic process
GO:0045893 positive regulation of transcription, DNA-templated

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AL096881 - Novel human mRNA similar to Rattus norvegicus 45 kDa secretory protein, AJ132352.
AK223587 - Homo sapiens mRNA for SEC14-like 2 variant, clone: FCC130E01.
BC048337 - Homo sapiens SEC14-like 2 (S. cerevisiae), mRNA (cDNA clone IMAGE:5212661), partial cds.
AK314390 - Homo sapiens cDNA, FLJ95164, highly similar to Homo sapiens SEC14-like 2 (S. cerevisiae) (SEC14L2), mRNA.
AK091402 - Homo sapiens cDNA FLJ34083 fis, clone FCBBF3004409, highly similar to SEC14-like protein 2.
BC058915 - Homo sapiens SEC14-like 2 (S. cerevisiae), mRNA (cDNA clone MGC:65053 IMAGE:5178251), complete cds.
AB033012 - Homo sapiens KIAA1186 mRNA for KIAA1186 protein.
CR456571 - Homo sapiens SEC14L2 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.SEC14L2).
AK303751 - Homo sapiens cDNA FLJ53690 complete cds, highly similar to SEC14-like protein 2.
AK296540 - Homo sapiens cDNA FLJ54104 complete cds, highly similar to SEC14-like protein 2.
CU013458 - Homo sapiens SEC14L2, mRNA (cDNA clone IMAGE:100000428), complete cds, without stop codon, in Gateway system.
CU013170 - Homo sapiens SEC14L2, mRNA (cDNA clone IMAGE:100000524), complete cds, with stop codon, in Gateway system.
AB384131 - Synthetic construct DNA, clone: pF1KSDA1186, Homo sapiens SEC14L2 gene for SEC14-like protein 2, complete cds, without stop codon, in Flexi system.
AY927438 - Homo sapiens mRNA sequence.
AY927439 - Homo sapiens mRNA sequence.
JD480207 - Sequence 461231 from Patent EP1572962.
JD026466 - Sequence 7490 from Patent EP1572962.
JD271591 - Sequence 252615 from Patent EP1572962.
JD036200 - Sequence 17224 from Patent EP1572962.
JD458625 - Sequence 439649 from Patent EP1572962.
AY927430 - Homo sapiens mRNA sequence.
AK056163 - Homo sapiens cDNA FLJ31601 fis, clone NT2RI2002592.
AY927434 - Homo sapiens mRNA sequence.
AY927435 - Homo sapiens mRNA sequence.
AY927436 - Homo sapiens mRNA sequence.
AY927437 - Homo sapiens mRNA sequence.
AY927441 - Homo sapiens mRNA sequence.
AY927432 - Homo sapiens mRNA sequence.
AY927433 - Homo sapiens mRNA sequence.
AY927440 - Homo sapiens mRNA sequence.
AY927431 - Homo sapiens mRNA sequence.
AY927442 - Homo sapiens mRNA sequence.
AK092576 - Homo sapiens cDNA FLJ35257 fis, clone PROST2004115.
JD298055 - Sequence 279079 from Patent EP1572962.
JD158085 - Sequence 139109 from Patent EP1572962.
JD469975 - Sequence 450999 from Patent EP1572962.
JD288222 - Sequence 269246 from Patent EP1572962.
JD448800 - Sequence 429824 from Patent EP1572962.
AY203959 - Homo sapiens LP6347 mRNA, complete cds.
JD508088 - Sequence 489112 from Patent EP1572962.
JD053371 - Sequence 34395 from Patent EP1572962.
JD266698 - Sequence 247722 from Patent EP1572962.
JD101768 - Sequence 82792 from Patent EP1572962.
JD565509 - Sequence 546533 from Patent EP1572962.
JD257242 - Sequence 238266 from Patent EP1572962.
JD371804 - Sequence 352828 from Patent EP1572962.
JD338691 - Sequence 319715 from Patent EP1572962.
JD453244 - Sequence 434268 from Patent EP1572962.
JD218929 - Sequence 199953 from Patent EP1572962.
JD493466 - Sequence 474490 from Patent EP1572962.
JD350765 - Sequence 331789 from Patent EP1572962.
JD380191 - Sequence 361215 from Patent EP1572962.
JD222413 - Sequence 203437 from Patent EP1572962.
JD231309 - Sequence 212333 from Patent EP1572962.
JD437109 - Sequence 418133 from Patent EP1572962.
JD216009 - Sequence 197033 from Patent EP1572962.
JD462224 - Sequence 443248 from Patent EP1572962.
JD341840 - Sequence 322864 from Patent EP1572962.
JD102505 - Sequence 83529 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z8Q1, C22orf6, ENST00000615189.1, ENST00000615189.2, ENST00000615189.3, ENST00000615189.4, F5H3U4, KIAA1186, KIAA1658, NM_012429, O76054, Q53EQ2, Q6PD61, Q9ULN4, S14L2_HUMAN, uc327psr.1, uc327psr.2
UCSC ID: ENST00000615189.5_5
RefSeq Accession: NM_012429.5
Protein: O76054 (aka S14L2_HUMAN or S142_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.