Human Gene SCHIP1 (ENST00000638749.2_7) from GENCODE V47lift37

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Description: schwannomin interacting protein 1, transcript variant 1 (from RefSeq NM_014575.4)
Gencode Transcript: ENST00000638749.2_7
Gencode Gene: ENSG00000151967.19_15
Transcript (Including UTRs)
Position: hg19 chr3:158,991,033-159,615,148 Size: 624,116 Total Exon Count: 8 Strand: +
Coding Region
Position: hg19 chr3:158,991,610-159,614,563 Size: 622,954 Coding Exon Count: 8

Page Index	Sequence and Links	Primers	MalaCards	CTD	Gene Alleles
Microarray Expression	RNA Structure	Other Species	mRNA Descriptions	Other Names	Model Information
Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chr3:158,991,033-159,615,148)			mRNA (may differ from genome)		Protein (487 aa)
Gene Sorter	Genome Browser	Other Species FASTA	VisiGene	Gene interactions	Table Schema
BioGPS	Ensembl	Entrez Gene	ExonPrimer	GeneCards	HGNC
Malacards	MGI	PubMed	BioGrid CRISPR DB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

MalaCards Disease Associations


	MalaCards Gene Search: SCHIP1 Diseases sorted by gene-association score: systemic scleroderma (4), celiac disease (4), renal cell carcinoma, papillary (3), autoimmune disease of gastrointestinal tract (3), hypersensitivity reaction disease (2), collagen disease (2), autoimmune disease of urogenital tract (2), immune system disease (1), meningioma, familial (1)

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D001564 Benzo(a)pyrene D003993 Dibutyl Phthalate D015123 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide D000082 Acetaminophen D000086 Acetazolamide D016604 Aflatoxin B1 D000535 Aluminum C038328 BEP protocol D002251 Carbon Tetrachloride D002794 Choline more ... click here to view the complete list

Common Gene Haplotype Alleles


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Microarray Expression Data


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mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-154.00	577	-0.267	Picture	PostScript	Text
3' UTR	-126.20	585	-0.216	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog
Gene Details	Gene Details
Gene Sorter	Gene Sorter
	RGD	Ensembl

Descriptions from all associated GenBank mRNAs


	AK096479 - Homo sapiens cDNA FLJ39160 fis, clone OCBBF2002290, highly similar to Homo sapiens schwannomin interacting protein 1 (SCHIP1), mRNA. DQ157847 - Homo sapiens schwannomin interacting protein 1 variant 2 mRNA, complete cds. DQ157848 - Homo sapiens schwannomin interacting protein 1 variant 1 mRNA, complete cds. BC036535 - Homo sapiens schwannomin interacting protein 1, mRNA (cDNA clone MGC:33753 IMAGE:5263291), complete cds. AK314662 - Homo sapiens cDNA, FLJ95509, highly similar to Homo sapiens schwannomin interacting protein 1 (SCHIP1), mRNA. AF145713 - Homo sapiens SCHIP-1 mRNA, complete cds. AF145715 - Homo sapiens SCHIP-1-D241/253 mRNA, complete cds. AK309223 - Homo sapiens cDNA, FLJ99264. DQ891190 - Synthetic construct clone IMAGE:100003820; FLH170021.01X; RZPDo839A1198D schwannomin interacting protein 1 (SCHIP1) gene, encodes complete protein. DQ894374 - Synthetic construct Homo sapiens clone IMAGE:100008834; FLH170017.01L; RZPDo839A1197D schwannomin interacting protein 1 (SCHIP1) gene, encodes complete protein. AF070614 - Homo sapiens clone 24732 unknown mRNA, partial cds. JD096268 - Sequence 77292 from Patent EP1572962. AK091871 - Homo sapiens cDNA FLJ34552 fis, clone IMR322000518, highly similar to Mus musculus schwannomin interacting protein 1 (Schip1), mRNA. BC005947 - Homo sapiens schwannomin interacting protein 1, mRNA (cDNA clone MGC:14583 IMAGE:4246326), complete cds. CU675205 - Synthetic construct Homo sapiens gateway clone IMAGE:100022137 5' read SCHIP1 mRNA. KJ898760 - Synthetic construct Homo sapiens clone ccsbBroadEn_08154 SCHIP1 gene, encodes complete protein. BX648179 - Homo sapiens mRNA; cDNA DKFZp686D05168 (from clone DKFZp686D05168). AF145714 - Homo sapiens SCHIP-1-D22/253 mRNA, complete cds. JD314185 - Sequence 295209 from Patent EP1572962. JD239003 - Sequence 220027 from Patent EP1572962. JD053947 - Sequence 34971 from Patent EP1572962. JD114606 - Sequence 95630 from Patent EP1572962. JD184516 - Sequence 165540 from Patent EP1572962. JD284860 - Sequence 265884 from Patent EP1572962.

Other Names for This Gene


	Alternate Gene Symbols: ENST00000638749.1, NM_014575, uc328fdh.1, uc328fdh.2 UCSC ID: ENST00000638749.2_7 RefSeq Accession: NM_014575.4

Gene Model Information


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Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.