Human Gene SARM1 (ENST00000379061.8_2) from GENCODE V47lift37
  Description: sterile alpha and TIR motif containing 1 (from HGNC SARM1)
Gencode Transcript: ENST00000379061.8_2
Gencode Gene: ENSG00000004139.14_9
Transcript (Including UTRs)
   Position: hg19 chr17:26,691,378-26,725,151 Size: 33,774 Total Exon Count: 11 Strand: +


Page IndexSequence and LinksPrimersMalaCardsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:26,691,378-26,725,151)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSEnsemblExonPrimerHGNCMalacardsPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: SARM1
Diseases sorted by gene-association score: wallerian degeneration (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.80 RPKM in Brain - Cerebellum
Total median expression: 116.30 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK293909 - Homo sapiens cDNA FLJ57960 complete cds.
AK302038 - Homo sapiens cDNA FLJ58639 complete cds, highly similar to Sterile alpha and TIR motif-containing protein 1.
AK314609 - Homo sapiens cDNA, FLJ95448.
AY444166 - Homo sapiens sterile alpha and TIR motif containing protein 1 isoform a (SARM1) mRNA, complete cds.
BC040429 - Homo sapiens sterile alpha and TIR motif containing 1, mRNA (cDNA clone IMAGE:5240465), partial cds.
BC122860 - Homo sapiens sterile alpha and TIR motif containing 1, mRNA (cDNA clone IMAGE:40085275), partial cds.
AJ290445 - Homo sapiens mRNA for KIAA0524SARM protein.
AB011096 - Homo sapiens mRNA for KIAA0524 protein, partial cds.
AK093615 - Homo sapiens cDNA FLJ36296 fis, clone THYMU2004320, highly similar to Sterile alpha and TIR motif-containing protein 1.
AK026397 - Homo sapiens cDNA: FLJ22744 fis, clone HUV00929.
JD186707 - Sequence 167731 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK302038, ENST00000379061.1, ENST00000379061.2, ENST00000379061.3, ENST00000379061.4, ENST00000379061.5, ENST00000379061.6, ENST00000379061.7, uc318ose.1
UCSC ID: ENST00000379061.8_2
RefSeq Accession: NM_015077.4

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.