Human Gene OR10J1 (ENST00000423932.6_11) from GENCODE V47lift37
  Description: olfactory receptor family 10 subfamily J member 1, transcript variant 3 (from RefSeq NM_012351.3)
Gencode Transcript: ENST00000423932.6_11
Gencode Gene: ENSG00000196184.10_17
Transcript (Including UTRs)
   Position: hg19 chr1:159,409,512-159,410,757 Size: 1,246 Total Exon Count: 1 Strand: +
Coding Region
   Position: hg19 chr1:159,409,582-159,410,511 Size: 930 Coding Exon Count: 1 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:159,409,512-159,410,757)mRNA (may differ from genome)Protein (309 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.22 RPKM in Testis
Total median expression: 7.23 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -7.9070-0.113 Picture PostScript Text
3' UTR -58.50246-0.238 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC112292 - Homo sapiens olfactory receptor, family 10, subfamily J, member 1, mRNA (cDNA clone IMAGE:8327760).
BC112290 - Homo sapiens olfactory receptor, family 10, subfamily J, member 1, mRNA (cDNA clone MGC:138495 IMAGE:8327758), complete cds.
BC069150 - Homo sapiens olfactory receptor, family 10, subfamily J, member 1, mRNA (cDNA clone MGC:95435 IMAGE:7217010), complete cds.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A126GWQ9, A0A126GWQ9_HUMAN, ENST00000423932.1, ENST00000423932.2, ENST00000423932.3, ENST00000423932.4, ENST00000423932.5, NM_012351, OR10J1 , uc319tey.1, uc319tey.2
UCSC ID: ENST00000423932.6_11
RefSeq Accession: NM_012351.3

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.