Human Gene NTMT1 (ENST00000372483.9_4) from GENCODE V47lift37
  Description: N-terminal Xaa-Pro-Lys N-methyltransferase 1, transcript variant 10 (from RefSeq NR_104596.2)
Gencode Transcript: ENST00000372483.9_4
Gencode Gene: ENSG00000148335.15_6
Transcript (Including UTRs)
   Position: hg19 chr9:132,388,442-132,398,414 Size: 9,973 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr9:132,394,983-132,397,743 Size: 2,761 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:132,388,442-132,398,414)mRNA (may differ from genome)Protein (223 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: NTM1A_HUMAN
DESCRIPTION: RecName: Full=N-terminal Xaa-Pro-Lys N-methyltransferase 1; EC=2.1.1.244; AltName: Full=Alpha N-terminal protein methyltransferase 1A; AltName: Full=Methyltransferase-like protein 11A; AltName: Full=N-terminal RCC1 methyltransferase; AltName: Full=X-Pro-Lys N-terminal protein methyltransferase 1A; Short=NTM1A;
FUNCTION: Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]- Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di- methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1.
CATALYTIC ACTIVITY: 3 S-adenosyl-L-methionine + N-terminal- (A,S)PK-[protein] = 3 S-adenosyl-L-homocysteine + N-terminal- N,N,N-trimethyl-N-(A,S)PK-[protein].
CATALYTIC ACTIVITY: 2 S-adenosyl-L-methionine + N-terminal-PPK- [protein] = 2 S-adenosyl-L-homocysteine + N-terminal-N,N-dimethyl- N-PPK-[protein].
INTERACTION: Q9Y2L1:DIS3; NbExp=1; IntAct=EBI-373016, EBI-373539;
SUBCELLULAR LOCATION: Nucleus. Note=Predominantly nuclear.
SIMILARITY: Belongs to the methyltransferase superfamily. NTM1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 42.56 RPKM in Testis
Total median expression: 514.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -74.60187-0.399 Picture PostScript Text
3' UTR -297.40671-0.443 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR008576 - DUF858_MeTrfase_lik

Pfam Domains:
PF00891 - O-methyltransferase domain
PF01209 - ubiE/COQ5 methyltransferase family
PF05891 - AdoMet dependent proline di-methyltransferase
PF08241 - Methyltransferase domain
PF08242 - Methyltransferase domain
PF13649 - Methyltransferase domain

SCOP Domains:
53335 - S-adenosyl-L-methionine-dependent methyltransferases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2EX4 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9BV86
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008168 methyltransferase activity
GO:0008276 protein methyltransferase activity
GO:0016740 transferase activity
GO:0042054 histone methyltransferase activity
GO:0071885 N-terminal protein N-methyltransferase activity

Biological Process:
GO:0006480 N-terminal protein amino acid methylation
GO:0007051 spindle organization
GO:0007059 chromosome segregation
GO:0016571 histone methylation
GO:0018011 N-terminal peptidyl-alanine methylation
GO:0018012 N-terminal peptidyl-alanine trimethylation
GO:0018013 N-terminal peptidyl-glycine methylation
GO:0018016 N-terminal peptidyl-proline dimethylation
GO:0032259 methylation
GO:0035572 N-terminal peptidyl-serine dimethylation
GO:0035573 N-terminal peptidyl-serine trimethylation

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK290957 - Homo sapiens cDNA FLJ78548 complete cds, highly similar to Homo sapiens AD-003 protein (AD-003), mRNA.
AK292332 - Homo sapiens cDNA FLJ76629 complete cds, highly similar to Homo sapiens AD-003 protein (AD-003), mRNA.
AK313829 - Homo sapiens cDNA, FLJ94451.
AK307056 - Homo sapiens cDNA, FLJ97004.
AK298840 - Homo sapiens cDNA FLJ51938 complete cds.
BC001396 - Homo sapiens methyltransferase like 11A, mRNA (cDNA clone MGC:783 IMAGE:3050940), complete cds.
BC033234 - Homo sapiens methyltransferase like 11A, mRNA (cDNA clone MGC:45918 IMAGE:5426447), complete cds.
AF110776 - Homo sapiens adrenal gland protein AD-003 mRNA, complete cds.
JD461599 - Sequence 442623 from Patent EP1572962.
JD164069 - Sequence 145093 from Patent EP1572962.
JD528805 - Sequence 509829 from Patent EP1572962.
JD554742 - Sequence 535766 from Patent EP1572962.
DQ581143 - Homo sapiens piRNA piR-49255, complete sequence.
KJ893666 - Synthetic construct Homo sapiens clone ccsbBroadEn_03060 METTL11A gene, encodes complete protein.
AB590967 - Synthetic construct DNA, clone: pFN21AE1717, Homo sapiens METTL11A gene for methyltransferase like 11A, without stop codon, in Flexi system.
DQ584836 - Homo sapiens piRNA piR-51948, complete sequence.
DQ590009 - Homo sapiens piRNA piR-57121, complete sequence.
DQ600376 - Homo sapiens piRNA piR-38442, complete sequence.
DQ586898 - Homo sapiens piRNA piR-54010, complete sequence.
JD466020 - Sequence 447044 from Patent EP1572962.
JD440092 - Sequence 421116 from Patent EP1572962.
JD529038 - Sequence 510062 from Patent EP1572962.
JD442843 - Sequence 423867 from Patent EP1572962.
JD382249 - Sequence 363273 from Patent EP1572962.
JD518599 - Sequence 499623 from Patent EP1572962.
JD076878 - Sequence 57902 from Patent EP1572962.
JD519841 - Sequence 500865 from Patent EP1572962.
DQ598146 - Homo sapiens piRNA piR-36212, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K4J2, A8K8G7, AD-003, C9orf32, ENST00000372483.1, ENST00000372483.2, ENST00000372483.3, ENST00000372483.4, ENST00000372483.5, ENST00000372483.6, ENST00000372483.7, ENST00000372483.8, METTL11A, NRMT, NRMT1, NR_104596, NTM1A_HUMAN, Q5SZB9, Q9BV86, Q9UI28, uc318jym.1, uc318jym.2
UCSC ID: ENST00000372483.9_4
RefSeq Accession: NM_014064.4
Protein: Q9BV86 (aka NTM1A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.