Human Gene NEK3 (ENST00000610828.5_7) from GENCODE V47lift37
  Description: NIMA related kinase 3, transcript variant 5 (from RefSeq NR_164641.1)
Gencode Transcript: ENST00000610828.5_7
Gencode Gene: ENSG00000136098.18_12
Transcript (Including UTRs)
   Position: hg19 chr13:52,706,783-52,733,732 Size: 26,950 Total Exon Count: 16 Strand: -
Coding Region
   Position: hg19 chr13:52,707,278-52,730,326 Size: 23,049 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:52,706,783-52,733,732)mRNA (may differ from genome)Protein (505 aa)
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-  Comments and Description Text from UniProtKB
  ID: NEK3_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein kinase Nek3; EC=2.7.11.1; AltName: Full=HSPK 36; AltName: Full=Never in mitosis A-related kinase 3; Short=NimA-related protein kinase 3;
FUNCTION: Protein kinase which influences neuronal morphogenesis and polarity through effects on microtubules. Regulates microtubule acetylation in neurons. Contributes to prolactin- mediated phosphorylation of PXN and VAV2. Implicated in prolactin- mediated cytoskeletal reorganization and motility of breast cancer cells through mechanisms involving RAC1 activation and phosphorylation of PXN and VAV2.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
COFACTOR: Magnesium.
ENZYME REGULATION: Prolactin stimulates its activity.
SUBUNIT: Interacts with PXN, PRLR, VAV1 and VAV2 and this interaction is prolactin-dependent.
INTERACTION: P52735:VAV2; NbExp=3; IntAct=EBI-476041, EBI-297549;
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Cell projection, axon (By similarity).
TISSUE SPECIFICITY: Up-regulated in malignant versus normal breast tissue. Isoform 2 shows a high level of expression in testis, ovary and brain.
PTM: Phosphorylation at Thr-479 regulates its catalytic activity (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. NEK Ser/Thr protein kinase family. NIMA subfamily.
SIMILARITY: Contains 1 protein kinase domain.
SEQUENCE CAUTION: Sequence=CAI12895.1; Type=Erroneous gene model prediction; Sequence=EAX08907.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NEK3
Diseases sorted by gene-association score: muscular phosphorylase kinase deficiency (8), phosphorylase kinase deficiency (3), muscle glycogenosis (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -38.50112-0.344 Picture PostScript Text
3' UTR -136.20495-0.275 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF03109 - ABC1 atypical kinase-like domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF14531 - Kinase-like

SCOP Domains:
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on P51956
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding

Biological Process:
GO:0000278 mitotic cell cycle
GO:0006468 protein phosphorylation
GO:0007049 cell cycle
GO:0016310 phosphorylation
GO:0030010 establishment of cell polarity
GO:0048812 neuron projection morphogenesis
GO:0051301 cell division
GO:0090043 regulation of tubulin deacetylation

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0030424 axon
GO:0042995 cell projection


-  Descriptions from all associated GenBank mRNAs
  AL833951 - Homo sapiens mRNA; cDNA DKFZp434B079 (from clone DKFZp434B079).
BC019916 - Homo sapiens NIMA (never in mitosis gene a)-related kinase 3, mRNA (cDNA clone MGC:29949 IMAGE:5000918), complete cds.
AK131359 - Homo sapiens cDNA FLJ16392 fis, clone TRACH2020048, moderately similar to Mus musculus serine/threonine-protein kinase NEK3 (Nek3) mRNA.
Z29067 - H.sapiens nek3 mRNA for protein kinase.
AK290259 - Homo sapiens cDNA FLJ75370 complete cds, highly similar to Homo sapiens NIMA (never in mitosis gene a)-related kinase 3 (NEK3), transcript variant 2, mRNA.
JD555425 - Sequence 536449 from Patent EP1572962.
JD428909 - Sequence 409933 from Patent EP1572962.
JD093144 - Sequence 74168 from Patent EP1572962.
JD204544 - Sequence 185568 from Patent EP1572962.
AB072828 - Homo sapiens NEK3 mRNA for NIMA-related protein kinase 3, complete cds.
JD340778 - Sequence 321802 from Patent EP1572962.
JD162803 - Sequence 143827 from Patent EP1572962.
JD168438 - Sequence 149462 from Patent EP1572962.
KJ905237 - Synthetic construct Homo sapiens clone ccsbBroadEn_14711 NEK3 gene, encodes complete protein.
DQ891803 - Synthetic construct clone IMAGE:100004433; FLH180098.01X; RZPDo839F11132D NIMA (never in mitosis gene a)-related kinase 3 (NEK3) gene, encodes complete protein.
DQ894987 - Synthetic construct Homo sapiens clone IMAGE:100009447; FLH180094.01L; RZPDo839F11131D NIMA (never in mitosis gene a)-related kinase 3 (NEK3) gene, encodes complete protein.
AB529010 - Synthetic construct DNA, clone: pF1KE0963, Homo sapiens NEK3 gene for NIMA (never in mitosis gene a)-related kinase 3, without stop codon, in Flexi system.
Z25434 - H.sapiens protein-serine/threonine kinase gene, complete CDS.
JD546142 - Sequence 527166 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K2J4, ENST00000610828.1, ENST00000610828.2, ENST00000610828.3, ENST00000610828.4, NEK3_HUMAN, NR_164641, P51956, Q5TAP2, Q8J023, Q8WUN5, uc327mzc.1, uc327mzc.2
UCSC ID: ENST00000610828.5_7
RefSeq Accession: NM_002498.3
Protein: P51956 (aka NEK3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.