Human Gene KCTD5 (ENST00000301738.9_4) from GENCODE V47lift37
  Description: potassium channel tetramerization domain containing 5 (from RefSeq NM_018992.4)
Gencode Transcript: ENST00000301738.9_4
Gencode Gene: ENSG00000167977.9_8
Transcript (Including UTRs)
   Position: hg19 chr16:2,732,524-2,759,031 Size: 26,508 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr16:2,732,550-2,757,328 Size: 24,779 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:2,732,524-2,759,031)mRNA (may differ from genome)Protein (234 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KCTD5_HUMAN
DESCRIPTION: RecName: Full=BTB/POZ domain-containing protein KCTD5;
FUNCTION: Its interaction with CUL3 suggests that it may act as a substrate adapter in some E3 ligase complex. Does not affect the function of Kv channel Kv2.1/KCNB1, Kv1.2/KCNA2, Kv4.2/KCND2 and Kv3.4/KCNC4.
SUBUNIT: Homopentamer. Interacts (via C-terminus) with GRASP55/GORASP2. Interacts with CUL3 and with ubiquitinated proteins. Interacts with adeno-associated virus 2 (AAV-2) REP proteins.
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Nucleus. Note=Predominantly cytoplasmic, translocated to the nucleus upon interaction with Rep proteins.
INDUCTION: Up-regulated in peripheral blood lymphocytes stimulated through the T-cell receptor.
DOMAIN: The BTB (POZ) domain is atypical and mediates the formation of a homopentamer instead of a homotetramer. Homopentamerization is due to the presence of 4 residues in the BTB (POZ) domain: Leu-56, Gly-100, Val-112 and Ala-118.
SIMILARITY: Contains 1 BTB (POZ) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.99 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 368.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -4.4026-0.169 Picture PostScript Text
3' UTR -614.201703-0.361 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000210 - BTB/POZ-like
IPR011333 - BTB/POZ_fold
IPR003131 - T1-type_BTB

Pfam Domains:
PF02214 - BTB/POZ domain

SCOP Domains:
54695 - POZ domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3DRX - X-ray MuPIT 3DRY - X-ray MuPIT 3DRZ - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9NXV2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0042802 identical protein binding
GO:0044877 macromolecular complex binding
GO:0097602 cullin family protein binding

Biological Process:
GO:0016032 viral process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051260 protein homooligomerization

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0031463 Cul3-RING ubiquitin ligase complex


-  Descriptions from all associated GenBank mRNAs
  AK000047 - Homo sapiens cDNA FLJ20040 fis, clone COL00417.
BC007314 - Homo sapiens potassium channel tetramerisation domain containing 5, mRNA (cDNA clone MGC:1078 IMAGE:2989642), complete cds.
KJ898982 - Synthetic construct Homo sapiens clone ccsbBroadEn_08376 KCTD5 gene, encodes complete protein.
JD559499 - Sequence 540523 from Patent EP1572962.
JD157070 - Sequence 138094 from Patent EP1572962.
JD477070 - Sequence 458094 from Patent EP1572962.
JD504581 - Sequence 485605 from Patent EP1572962.
JD202586 - Sequence 183610 from Patent EP1572962.
JD319891 - Sequence 300915 from Patent EP1572962.
JD515331 - Sequence 496355 from Patent EP1572962.
JD397431 - Sequence 378455 from Patent EP1572962.
JD490252 - Sequence 471276 from Patent EP1572962.
JD172936 - Sequence 153960 from Patent EP1572962.
JD186342 - Sequence 167366 from Patent EP1572962.
JD254559 - Sequence 235583 from Patent EP1572962.
JD260144 - Sequence 241168 from Patent EP1572962.
JD375039 - Sequence 356063 from Patent EP1572962.
JD324956 - Sequence 305980 from Patent EP1572962.
JD204848 - Sequence 185872 from Patent EP1572962.
JD527598 - Sequence 508622 from Patent EP1572962.
JD475500 - Sequence 456524 from Patent EP1572962.
JD566048 - Sequence 547072 from Patent EP1572962.
JD207506 - Sequence 188530 from Patent EP1572962.
JD480765 - Sequence 461789 from Patent EP1572962.
JD076813 - Sequence 57837 from Patent EP1572962.
JD520619 - Sequence 501643 from Patent EP1572962.
JD368899 - Sequence 349923 from Patent EP1572962.
JD368204 - Sequence 349228 from Patent EP1572962.
JD363376 - Sequence 344400 from Patent EP1572962.
JD273567 - Sequence 254591 from Patent EP1572962.
JD459569 - Sequence 440593 from Patent EP1572962.
JD502098 - Sequence 483122 from Patent EP1572962.
JD186207 - Sequence 167231 from Patent EP1572962.
JD190692 - Sequence 171716 from Patent EP1572962.
JD484032 - Sequence 465056 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: D3DU96, ENST00000301738.1, ENST00000301738.2, ENST00000301738.3, ENST00000301738.4, ENST00000301738.5, ENST00000301738.6, ENST00000301738.7, ENST00000301738.8, KCTD5_HUMAN, NM_018992, Q9NXV2, uc317mwk.1, uc317mwk.2
UCSC ID: ENST00000301738.9_4
RefSeq Accession: NM_018992.4
Protein: Q9NXV2 (aka KCTD5_HUMAN or KDD5_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.