Human Gene KCTD16 (ENST00000512467.6_4) from GENCODE V47lift37
  Description: potassium channel tetramerization domain containing 16 (from RefSeq NM_020768.4)
Gencode Transcript: ENST00000512467.6_4
Gencode Gene: ENSG00000183775.11_8
Transcript (Including UTRs)
   Position: hg19 chr5:143,550,437-143,865,249 Size: 314,813 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr5:143,586,278-143,853,677 Size: 267,400 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:143,550,437-143,865,249)mRNA (may differ from genome)Protein (428 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: KCD16_HUMAN
DESCRIPTION: RecName: Full=BTB/POZ domain-containing protein KCTD16; AltName: Full=Potassium channel tetramerization domain-containing protein 16;
FUNCTION: Auxiliary subunit of GABA-B receptors that determine the pharmacology and kinetics of the receptor response. Increases agonist potency and markedly alter the G-protein signaling of the receptors by accelerating onset and promoting desensitization (By similarity).
SUBUNIT: Interacts as a tetramer with GABRB1 and GABRB2 (By similarity).
SUBCELLULAR LOCATION: Cell junction, synapse, presynaptic cell membrane. Cell junction, synapse, postsynaptic cell membrane (By similarity).
SIMILARITY: Contains 1 BTB (POZ) domain.
SEQUENCE CAUTION: Sequence=BAA92555.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.84 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 20.76 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -157.00629-0.250 Picture PostScript Text
3' UTR -2815.7011572-0.243 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000210 - BTB/POZ-like
IPR011333 - BTB/POZ_fold
IPR003131 - T1-type_BTB

Pfam Domains:
PF02214 - BTB/POZ domain

SCOP Domains:
54695 - POZ domain

ModBase Predicted Comparative 3D Structure on Q68DU8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0008277 regulation of G-protein coupled receptor protein signaling pathway
GO:0051260 protein homooligomerization

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0030054 cell junction
GO:0042734 presynaptic membrane
GO:0043235 receptor complex
GO:0045202 synapse
GO:0045211 postsynaptic membrane


-  Descriptions from all associated GenBank mRNAs
  AK292477 - Homo sapiens cDNA FLJ77188 complete cds, highly similar to Homo sapiens potassium channel tetramerisation domain containing 16 (KCTD16), mRNA.
CR749266 - Homo sapiens mRNA; cDNA DKFZp781A1155 (from clone DKFZp781A1155).
AB037738 - Homo sapiens KIAA1317 mRNA for KIAA1317 protein.
BC113435 - Homo sapiens potassium channel tetramerisation domain containing 16, mRNA (cDNA clone MGC:141995 IMAGE:8322487), complete cds.
BC111962 - Homo sapiens potassium channel tetramerisation domain containing 16, mRNA (cDNA clone MGC:138167 IMAGE:8327430), complete cds.
HQ258238 - Synthetic construct Homo sapiens clone IMAGE:100072547 potassium channel tetramerisation domain containing 16 (KCTD16) (KCTD16) gene, encodes complete protein.
KJ894433 - Synthetic construct Homo sapiens clone ccsbBroadEn_03827 KCTD16 gene, encodes complete protein.
AB384174 - Synthetic construct DNA, clone: pF1KSDA1317, Homo sapiens KCTD16 gene for BTB/POZ domain-containing protein KCTD16, complete cds, without stop codon, in Flexi system.
JD214818 - Sequence 195842 from Patent EP1572962.
JD433515 - Sequence 414539 from Patent EP1572962.
JD312599 - Sequence 293623 from Patent EP1572962.
JD504501 - Sequence 485525 from Patent EP1572962.
JD304547 - Sequence 285571 from Patent EP1572962.
JD042431 - Sequence 23455 from Patent EP1572962.
JD376566 - Sequence 357590 from Patent EP1572962.
JD348070 - Sequence 329094 from Patent EP1572962.
JD566697 - Sequence 547721 from Patent EP1572962.
JD265630 - Sequence 246654 from Patent EP1572962.
JD454949 - Sequence 435973 from Patent EP1572962.
JD346092 - Sequence 327116 from Patent EP1572962.
JD231102 - Sequence 212126 from Patent EP1572962.
JD151066 - Sequence 132090 from Patent EP1572962.
JD468659 - Sequence 449683 from Patent EP1572962.
JD101749 - Sequence 82773 from Patent EP1572962.
JD357199 - Sequence 338223 from Patent EP1572962.
JD049380 - Sequence 30404 from Patent EP1572962.
JD406506 - Sequence 387530 from Patent EP1572962.
JD235639 - Sequence 216663 from Patent EP1572962.
JD304263 - Sequence 285287 from Patent EP1572962.
JD510700 - Sequence 491724 from Patent EP1572962.
JD279924 - Sequence 260948 from Patent EP1572962.
JD234911 - Sequence 215935 from Patent EP1572962.
JD040123 - Sequence 21147 from Patent EP1572962.
JD367478 - Sequence 348502 from Patent EP1572962.
JD111487 - Sequence 92511 from Patent EP1572962.
JD085935 - Sequence 66959 from Patent EP1572962.
JD350228 - Sequence 331252 from Patent EP1572962.
JD120816 - Sequence 101840 from Patent EP1572962.
JD120817 - Sequence 101841 from Patent EP1572962.
JD549569 - Sequence 530593 from Patent EP1572962.
BC036491 - Homo sapiens cDNA clone IMAGE:5262496.
AK091723 - Homo sapiens cDNA FLJ34404 fis, clone HCHON2008239.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000512467.1, ENST00000512467.2, ENST00000512467.3, ENST00000512467.4, ENST00000512467.5, KCD16_HUMAN, KIAA1317, NM_020768, Q68DU8, Q9P2M9, uc323iyh.1, uc323iyh.2
UCSC ID: ENST00000512467.6_4
RefSeq Accession: NM_020768.4
Protein: Q68DU8 (aka KCD16_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.