Human Gene KCNJ1 (ENST00000392666.6_9) from GENCODE V47lift37
  Description: potassium inwardly rectifying channel subfamily J member 1, transcript variant 4 (from RefSeq NM_153766.3)
Gencode Transcript: ENST00000392666.6_9
Gencode Gene: ENSG00000151704.16_14
Transcript (Including UTRs)
   Position: hg19 chr11:128,707,915-128,737,191 Size: 29,277 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr11:128,709,020-128,710,138 Size: 1,119 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:128,707,915-128,737,191)mRNA (may differ from genome)Protein (372 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
Human Cortex Gene ExpressionMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IRK1_HUMAN
DESCRIPTION: RecName: Full=ATP-sensitive inward rectifier potassium channel 1; AltName: Full=ATP-regulated potassium channel ROM-K; AltName: Full=Inward rectifier K(+) channel Kir1.1; AltName: Full=Potassium channel, inwardly rectifying subfamily J member 1;
FUNCTION: In the kidney, probably plays a major role in potassium homeostasis. Inward rectifier potassium channels are characterized by a greater tendency to allow potassium to flow into the cell rather than out of it. Their voltage dependence is regulated by the concentration of extracellular potassium; as external potassium is raised, the voltage range of the channel opening shifts to more positive voltages. The inward rectification is mainly due to the blockage of outward current by internal magnesium. This channel is activated by internal ATP and can be blocked by external barium.
ENZYME REGULATION: Inhibited by WNK3.
SUBUNIT: Interacts with SGK1 and SLC9A3R2/NHERF2.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein. Note=Phosphorylation at Ser-44 by SGK1 is necessary for its expression at the cell membrane.
TISSUE SPECIFICITY: In the kidney and pancreatic islets. Lower levels in skeletal muscle, pancreas, spleen, brain, heart and liver.
PTM: Phosphorylation at Ser-44 by SGK1 is necessary for its expression at the cell membrane.
DISEASE: Defects in KCNJ1 are the cause of Bartter syndrome type 2 (BS2) [MIM:241200]; also termed hyperprostanglandin E syndrome 2. BS refers to a group of autosomal recessive disorders characterized by impaired salt reabsorption in the thick ascending loop of Henle with pronounced salt wasting, hypokalemic metabolic alkalosis, and varying degrees of hypercalciuria. BS2 is a life- threatening condition beginning in utero, with marked fetal polyuria that leads to polyhydramnios and premature delivery. Another hallmark of BS2 is a marked hypercalciuria and, as a secondary consequence, the development of nephrocalcinosis and osteopenia.
SIMILARITY: Belongs to the inward rectifier-type potassium channel (TC 1.A.2.1) family. KCNJ1 subfamily.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/KCNJ1";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: KCNJ1
Diseases sorted by gene-association score: bartter syndrome, type 2* (1328), antenatal bartter syndrome* (379), bartter disease (39), gitelman syndrome (18), bartter syndrome, type 3 (16), hypokalemia (15), polyhydramnios (13), pseudohypoaldosteronism (12), nephrocalcinosis (12), pseudohyperkalemia, familial, 2, due to red cell leak (8), renal tubular transport disease (8), hypercalciuria, absorptive (7), leber congenital amaurosis 16 (7), mineral metabolism disease (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 30.55 RPKM in Kidney - Cortex
Total median expression: 36.52 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -79.00315-0.251 Picture PostScript Text
3' UTR -264.401105-0.239 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR014756 - Ig_E-set
IPR016449 - K_chnl_inward-rec_Kir
IPR003268 - K_chnl_inward-rec_Kir1.1
IPR013518 - K_chnl_inward-rec_Kir_cyto

Pfam Domains:
PF01007 - Inward rectifier potassium channel transmembrane domain
PF17655 - Inward rectifier potassium channel C-terminal domain

SCOP Domains:
81296 - E set domains
81324 - Voltage-gated potassium channels

ModBase Predicted Comparative 3D Structure on P48048
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0005242 inward rectifier potassium channel activity
GO:0005244 voltage-gated ion channel activity
GO:0005524 ATP binding
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding
GO:0015272 ATP-activated inward rectifier potassium channel activity

Biological Process:
GO:0006811 ion transport
GO:0006813 potassium ion transport
GO:0007588 excretion
GO:0010107 potassium ion import
GO:0034765 regulation of ion transmembrane transport

Cellular Component:
GO:0005886 plasma membrane
GO:0008076 voltage-gated potassium channel complex
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC063109 - Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 1, mRNA (cDNA clone IMAGE:4593616).
U03884 - Human inwardly rectifying K+ channel (ROMK1) mRNA, complete cds.
E10521 - cDNA encoding human kidney ATP-regulated potassium channel protein.
E10523 - cDNA encoding human kidney ATP-regulated potassium channel protein.
E10520 - cDNA encoding human kidney ATP-regulated potassium channel protein.
E10522 - cDNA encoding human kidney ATP-regulated potassium channel protein.
U12543 - Human ROM-K potassium channel protein isoform romk3 mRNA, complete cds.
U12542 - Human ROM-K potassium channel protein isoform romk2 mRNA, complete cds.
AK308032 - Homo sapiens cDNA, FLJ97980.
AK308033 - Homo sapiens cDNA, FLJ97981.
U12544 - Human ROM-K potassium channel protein isoform romk4 mRNA, partial cds.
U12545 - Human ROM-K potassium channel protein isoform romk5 mRNA, partial cds.
JD545464 - Sequence 526488 from Patent EP1572962.
JD062889 - Sequence 43913 from Patent EP1572962.
JD045958 - Sequence 26982 from Patent EP1572962.
JD438065 - Sequence 419089 from Patent EP1572962.
E10524 - cDNA encoding human kidney ATP-regulated potassium channel protein.
U12541 - Human ROM-K potassium channel protein isoform romk1 mRNA, complete cds.
JD139703 - Sequence 120727 from Patent EP1572962.
BC136361 - Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 1, mRNA (cDNA clone MGC:167971 IMAGE:9020348), complete cds.
BC136360 - Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 1, mRNA (cDNA clone MGC:167970 IMAGE:9020347), complete cds.
AK290797 - Homo sapiens cDNA FLJ76032 complete cds, highly similar to Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 1 (KCNJ1), transcript variant rom-k1, mRNA.
BC074752 - Homo sapiens potassium inwardly-rectifying channel, subfamily J, member 1, mRNA (cDNA clone MGC:103829 IMAGE:30915211), complete cds.
AK314267 - Homo sapiens cDNA, FLJ95019.
KJ891500 - Synthetic construct Homo sapiens clone ccsbBroadEn_00894 KCNJ1 gene, encodes complete protein.
KR712072 - Synthetic construct Homo sapiens clone CCSBHm_00035357 KCNJ1 (KCNJ1) mRNA, encodes complete protein.
KR712073 - Synthetic construct Homo sapiens clone CCSBHm_00035372 KCNJ1 (KCNJ1) mRNA, encodes complete protein.
KR712074 - Synthetic construct Homo sapiens clone CCSBHm_00035380 KCNJ1 (KCNJ1) mRNA, encodes complete protein.
KR712075 - Synthetic construct Homo sapiens clone CCSBHm_00035386 KCNJ1 (KCNJ1) mRNA, encodes complete protein.
S78737 - ATP-regulated potassium channel [human, brain, mRNA Partial, 306 nt].
JD488730 - Sequence 469754 from Patent EP1572962.
JD466713 - Sequence 447737 from Patent EP1572962.
JD469462 - Sequence 450486 from Patent EP1572962.
JD316126 - Sequence 297150 from Patent EP1572962.
JD061187 - Sequence 42211 from Patent EP1572962.
JD506405 - Sequence 487429 from Patent EP1572962.
JD528987 - Sequence 510011 from Patent EP1572962.
JD376422 - Sequence 357446 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P48048 (Reactome details) participates in the following event(s):

R-HSA-1296045 Activation of Potassium transport channels
R-HSA-1296067 Potassium transport channels
R-HSA-1296065 Inwardly rectifying K+ channels
R-HSA-1296071 Potassium Channels
R-HSA-112316 Neuronal System

-  Other Names for This Gene
  Alternate Gene Symbols: B2RMR4, ENST00000392666.1, ENST00000392666.2, ENST00000392666.3, ENST00000392666.4, ENST00000392666.5, KCNJ1_HUMAN, NM_153766, P48048, Q6LD67, ROMK1, uc318vgz.1, uc318vgz.2
UCSC ID: ENST00000392666.6_9
RefSeq Accession: NM_153766.3
Protein: P48048 (aka IRK1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.