Human Gene INTS1 (ENST00000404767.8_7) from GENCODE V47lift37
  Description: integrator complex subunit 1 (from RefSeq NM_001080453.3)
Gencode Transcript: ENST00000404767.8_7
Gencode Gene: ENSG00000164880.16_9
Transcript (Including UTRs)
   Position: hg19 chr7:1,509,913-1,544,025 Size: 34,113 Total Exon Count: 48 Strand: -
Coding Region
   Position: hg19 chr7:1,510,213-1,543,596 Size: 33,384 Coding Exon Count: 47 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:1,509,913-1,544,025)mRNA (may differ from genome)Protein (2190 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: INT1_HUMAN
DESCRIPTION: RecName: Full=Integrator complex subunit 1; Short=Int1;
FUNCTION: Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes.
SUBUNIT: Belongs to the multiprotein complex Integrator, at least composed of INTS1, INTS2, INTS3, INTS4, INTS5, INTS6, INTS7, INTS8, INTS9/RC74, INTS10, CPSF3L/INTS11 and INTS12.
SUBCELLULAR LOCATION: Nucleus membrane; Single-pass membrane protein (Potential).
SIMILARITY: Belongs to the Integrator subunit 1 family.
SEQUENCE CAUTION: Sequence=AAQ88846.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 46.24 RPKM in Testis
Total median expression: 877.78 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -57.10108-0.529 Picture PostScript Text
3' UTR -153.30300-0.511 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR022145 - DUF3677

Pfam Domains:
PF12432 - Protein of unknown function (DUF3677)

SCOP Domains:
48371 - ARM repeat

ModBase Predicted Comparative 3D Structure on Q8N201
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0016180 snRNA processing
GO:0034474 U2 snRNA 3'-end processing
GO:0042795 snRNA transcription from RNA polymerase II promoter

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031965 nuclear membrane
GO:0032039 integrator complex


-  Descriptions from all associated GenBank mRNAs
  AL137358 - Homo sapiens mRNA; cDNA DKFZp434C0126 (from clone DKFZp434C0126).
AL050110 - Homo sapiens mRNA; cDNA DKFZp586J0619 (from clone DKFZp586J0619).
BC018777 - Homo sapiens integrator complex subunit 1, mRNA (cDNA clone IMAGE:4869992), partial cds.
BC013367 - Homo sapiens integrator complex subunit 1, mRNA (cDNA clone IMAGE:3677373), partial cds.
BC069262 - Homo sapiens integrator complex subunit 1, mRNA (cDNA clone IMAGE:6378033), partial cds.
AY358482 - Homo sapiens clone DNA77631 HILV1821 (UNQ1821) mRNA, complete cds.
BC004286 - Homo sapiens integrator complex subunit 1, mRNA (cDNA clone IMAGE:3618123), partial cds.
AB037861 - Homo sapiens mRNA for KIAA1440 protein, partial cds.
JD425634 - Sequence 406658 from Patent EP1572962.
JD450193 - Sequence 431217 from Patent EP1572962.
JD140012 - Sequence 121036 from Patent EP1572962.
JD186561 - Sequence 167585 from Patent EP1572962.
JD186560 - Sequence 167584 from Patent EP1572962.
JD395697 - Sequence 376721 from Patent EP1572962.
JD516446 - Sequence 497470 from Patent EP1572962.
JD162334 - Sequence 143358 from Patent EP1572962.
JD141255 - Sequence 122279 from Patent EP1572962.
JD406511 - Sequence 387535 from Patent EP1572962.
JD234279 - Sequence 215303 from Patent EP1572962.
JD181298 - Sequence 162322 from Patent EP1572962.
JD128319 - Sequence 109343 from Patent EP1572962.
JD414390 - Sequence 395414 from Patent EP1572962.
JD137594 - Sequence 118618 from Patent EP1572962.
JD123609 - Sequence 104633 from Patent EP1572962.
JD195445 - Sequence 176469 from Patent EP1572962.
JD467364 - Sequence 448388 from Patent EP1572962.
JD141024 - Sequence 122048 from Patent EP1572962.
JD278190 - Sequence 259214 from Patent EP1572962.
JD452433 - Sequence 433457 from Patent EP1572962.
JD273495 - Sequence 254519 from Patent EP1572962.
JD140477 - Sequence 121501 from Patent EP1572962.
JD255003 - Sequence 236027 from Patent EP1572962.
AK128368 - Homo sapiens cDNA FLJ46511 fis, clone THYMU3031868.
AK093809 - Homo sapiens cDNA FLJ36490 fis, clone THYMU2018189.
AX748318 - Sequence 1843 from Patent EP1308459.
JD022828 - Sequence 3852 from Patent EP1572962.
JD033136 - Sequence 14160 from Patent EP1572962.
JD025090 - Sequence 6114 from Patent EP1572962.
JD027705 - Sequence 8729 from Patent EP1572962.
JD406596 - Sequence 387620 from Patent EP1572962.
JD128448 - Sequence 109472 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8N201 (Reactome details) participates in the following event(s):

R-HSA-6814885 CBCAP complex binds 7-methylguanosine cap of snRNA
R-HSA-6807505 RNA polymerase II transcribes snRNA genes
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A6NJ44, ENST00000404767.1, ENST00000404767.2, ENST00000404767.3, ENST00000404767.4, ENST00000404767.5, ENST00000404767.6, ENST00000404767.7, INT1_HUMAN, KIAA1440, NM_001080453, Q6NT70, Q6UX74, Q8N201, Q8WV40, Q96D36, Q9NTD1, Q9P2A8, Q9Y3W8, uc319ctm.1, uc319ctm.2, UNQ1821/PRO3434
UCSC ID: ENST00000404767.8_7
RefSeq Accession: NM_001080453.3
Protein: Q8N201 (aka INT1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.