Human Gene GBA1 (ENST00000327247.9_4) from GENCODE V47lift37
  Description: glucosylceramidase beta, transcript variant 3 (from RefSeq NM_001005742.3)
Gencode Transcript: ENST00000327247.9_4
Gencode Gene: ENSG00000177628.16_10
Transcript (Including UTRs)
   Position: hg19 chr1:155,204,243-155,214,461 Size: 10,219 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr1:155,204,786-155,210,903 Size: 6,118 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:155,204,243-155,214,461)mRNA (may differ from genome)Protein (536 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
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OMIMPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GLCM_HUMAN
DESCRIPTION: RecName: Full=Glucosylceramidase; EC=3.2.1.45; AltName: Full=Acid beta-glucosidase; AltName: Full=Alglucerase; AltName: Full=Beta-glucocerebrosidase; AltName: Full=D-glucosyl-N-acylsphingosine glucohydrolase; AltName: Full=Imiglucerase; Flags: Precursor;
CATALYTIC ACTIVITY: D-glucosyl-N-acylsphingosine + H(2)O = D- glucose + N-acylsphingosine.
ENZYME REGULATION: Requires saposin-C and anionic phospholipids for activity.
SUBUNIT: Interacts with saposin-C. Interacts with SCARB2.
INTERACTION: O35114:Scarb2 (xeno); NbExp=1; IntAct=EBI-1564609, EBI-1564519;
SUBCELLULAR LOCATION: Lysosome membrane; Peripheral membrane protein; Lumenal side. Note=Interaction with saposin-C promotes membrane association. Targeting to lysosomes occurs through an alternative MPR-independent mechanism via SCARB2.
DISEASE: Defects in GBA are the cause of Gaucher disease (GD) [MIM:230800]; also known as glucocerebrosidase deficiency. GD is the most prevalent lysosomal storage disease, characterized by accumulation of glucosylceramide in the reticulo-endothelial system. Different clinical forms are recognized depending on the presence (neuronopathic forms) or absence of central nervous system involvement, severity and age of onset.
DISEASE: Defects in GBA are the cause of Gaucher disease type 1 (GD1) [MIM:230800]; also known as adult non-neuronopathic Gaucher disease. GD1 is characterized by hepatosplenomegaly with consequent anemia and thrombopenia, and bone involvement. The central nervous system is not involved.
DISEASE: Defects in GBA are the cause of Gaucher disease type 2 (GD2) [MIM:230900]; also known as acute neuronopathic Gaucher disease. GD2 is the most severe form and is universally progressive and fatal. It manifests soon after birth, with death generally occurring before patients reach two years of age.
DISEASE: Defects in GBA are the cause of Gaucher disease type 3 (GD3) [MIM:231000]; also known as subacute neuronopathic Gaucher disease. GD3 has central nervous manifestations.
DISEASE: Defects in GBA are the cause of Gaucher disease type 3C (GD3C) [MIM:231005]; also known as pseudo-Gaucher disease or Gaucher-like disease.
DISEASE: Defects in GBA are the cause of Gaucher disease perinatal lethal (GDPL) [MIM:608013]. It is a distinct form of Gaucher disease type 2, characterized by fetal onset. Hydrops fetalis, in utero fetal death and neonatal distress are prominent features. When hydrops is absent, neurologic involvement begins in the first week and leads to death within 3 months. Hepatosplenomegaly is a major sign, and is associated with ichthyosis, arthrogryposis, and facial dysmorphism.
DISEASE: Note=Perinatal lethal Gaucher disease is associated with non-immune hydrops fetalis, a generalized edema of the fetus with fluid accumulation in the body cavities due to non-immune causes. Non-immune hydrops fetalis is not a diagnosis in itself but a symptom, a feature of many genetic disorders, and the end-stage of a wide variety of disorders.
DISEASE: Defects in GBA contribute to susceptibility to Parkinson disease (PARK) [MIM:168600]. A complex neurodegenerative disorder characterized by bradykinesia, resting tremor, muscular rigidity and postural instability. Additional features are characteristic postural abnormalities, dysautonomia, dystonic cramps, and dementia. The pathology of Parkinson disease involves the loss of dopaminergic neurons in the substantia nigra and the presence of Lewy bodies (intraneuronal accumulations of aggregated proteins), in surviving neurons in various areas of the brain. The disease is progressive and usually manifests after the age of 50 years, although early-onset cases (before 50 years) are known. The majority of the cases are sporadic suggesting a multifactorial etiology based on environmental and genetic factors. However, some patients present with a positive family history for the disease. Familial forms of the disease usually begin at earlier ages and are associated with atypical clinical features.
PHARMACEUTICAL: Available under the names Ceredase and Cerezyme (Genzyme). Used to treat Gaucher's disease.
SIMILARITY: Belongs to the glycosyl hydrolase 30 family.
WEB RESOURCE: Name=Ceredase; Note=Clinical information on Ceredase; URL="http://www.rxlist.com/ceredase-drug.htm";
WEB RESOURCE: Name=Cerezyme; Note=Clinical information on Cerezyme; URL="http://www.rxlist.com/cerezyme-drug.htm";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/GBA";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 23.43 RPKM in Pituitary
Total median expression: 477.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -87.70233-0.376 Picture PostScript Text
3' UTR -207.00543-0.381 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013780 - Glyco_hydro_13_b
IPR001139 - Glyco_hydro_30
IPR013781 - Glyco_hydro_catalytic_dom
IPR017853 - Glycoside_hydrolase_SF

Pfam Domains:
PF02055 - Glycosyl hydrolase family 30 TIM-barrel domain
PF17189 - Glycosyl hydrolase family 30 beta sandwich domain

SCOP Domains:
51011 - Glycosyl hydrolase domain
51445 - (Trans)glycosidases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1OGS - X-ray 1Y7V - X-ray MuPIT 2F61 - X-ray MuPIT 2J25 - X-ray MuPIT 2NSX - X-ray MuPIT 2NT0 - X-ray MuPIT 2NT1 - X-ray MuPIT 2V3D - X-ray MuPIT 2V3E - X-ray MuPIT 2V3F - X-ray MuPIT 2VT0 - X-ray MuPIT 2WCG - X-ray MuPIT 2WKL - X-ray 2XWD - X-ray MuPIT 2XWE - X-ray MuPIT 3GXD - X-ray MuPIT 3GXF - X-ray MuPIT 3GXI - X-ray MuPIT 3GXM - X-ray MuPIT 3KE0 - X-ray MuPIT 3KEH - X-ray MuPIT 3RIK - X-ray MuPIT 3RIL - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P04062
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGDEnsembl WormBase 
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004348 glucosylceramidase activity
GO:0005102 receptor binding
GO:0005124 scavenger receptor binding
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds

Biological Process:
GO:0006629 lipid metabolic process
GO:0006665 sphingolipid metabolic process
GO:0006680 glucosylceramide catabolic process
GO:0008152 metabolic process
GO:0009267 cellular response to starvation
GO:0009268 response to pH
GO:0016241 regulation of macroautophagy
GO:0023021 termination of signal transduction
GO:0032268 regulation of cellular protein metabolic process
GO:0032269 negative regulation of cellular protein metabolic process
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032463 negative regulation of protein homooligomerization
GO:0032715 negative regulation of interleukin-6 production
GO:0033561 regulation of water loss via skin
GO:0033574 response to testosterone
GO:0035307 positive regulation of protein dephosphorylation
GO:0043243 positive regulation of protein complex disassembly
GO:0043407 negative regulation of MAP kinase activity
GO:0043589 skin morphogenesis
GO:0043627 response to estrogen
GO:0046512 sphingosine biosynthetic process
GO:0046513 ceramide biosynthetic process
GO:0050728 negative regulation of inflammatory response
GO:0051246 regulation of protein metabolic process
GO:0051247 positive regulation of protein metabolic process
GO:0071356 cellular response to tumor necrosis factor
GO:0071548 response to dexamethasone
GO:0097066 response to thyroid hormone
GO:1901215 negative regulation of neuron death
GO:1901805 beta-glucoside catabolic process
GO:1903052 positive regulation of proteolysis involved in cellular protein catabolic process
GO:1903061 positive regulation of protein lipidation
GO:1904457 positive regulation of neuronal action potential
GO:1904925 positive regulation of mitophagy in response to mitochondrial depolarization
GO:1905037 autophagosome organization
GO:1905165 regulation of lysosomal protein catabolic process
GO:0007005 mitochondrion organization
GO:0031175 neuron projection development
GO:0036473 cell death in response to oxidative stress

Cellular Component:
GO:0005615 extracellular space
GO:0005764 lysosome
GO:0005765 lysosomal membrane
GO:0016020 membrane
GO:0019898 extrinsic component of membrane
GO:0043202 lysosomal lumen
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  KJ690773 - Homo sapiens clone 4D glucosylceramidase-like protein mRNA, complete cds.
KJ690772 - Homo sapiens clone 11G glucosylceramidase-like protein mRNA, complete cds.
BC003356 - Homo sapiens glucosidase, beta; acid (includes glucosylceramidase), mRNA (cDNA clone MGC:5191 IMAGE:2899915), complete cds.
M19285 - Human glucocerebrosidase mRNA, complete cds.
BX648487 - Homo sapiens mRNA; cDNA DKFZp686D0678 (from clone DKFZp686D0678).
M16328 - Human glucocerebrosidase mRNA, complete cds.
D13286 - Homo sapiens mRNA for glucocerebrosidase, complete cds.
AH001468 - Homo sapiens glucocerebrosidase mRNA mRNA, partial sequence.
JD084738 - Sequence 65762 from Patent EP1572962.
JD496617 - Sequence 477641 from Patent EP1572962.
AK298900 - Homo sapiens cDNA FLJ50618 complete cds, highly similar to Glucosylceramidase precursor (EC 3.2.1.45).
JD064453 - Sequence 45477 from Patent EP1572962.
JD555386 - Sequence 536410 from Patent EP1572962.
JD073335 - Sequence 54359 from Patent EP1572962.
JD479520 - Sequence 460544 from Patent EP1572962.
JD308813 - Sequence 289837 from Patent EP1572962.
JD182795 - Sequence 163819 from Patent EP1572962.
JD396385 - Sequence 377409 from Patent EP1572962.
AK291911 - Homo sapiens cDNA FLJ77760 complete cds, highly similar to Homo sapiens glucosidase, beta; acid (includes glucosylceramidase), mRNA.
AK301374 - Homo sapiens cDNA FLJ50709 complete cds, highly similar to Glucosylceramidase precursor (EC 3.2.1.45).
JD553328 - Sequence 534352 from Patent EP1572962.
K02920 - Homo sapiens lysosomal glucocerebrosidase precursor mRNA, complete cds.
AK302000 - Homo sapiens cDNA FLJ56170 complete cds, highly similar to Glucosylceramidase precursor (EC 3.2.1.45).
AK300829 - Homo sapiens cDNA FLJ50695 complete cds, highly similar to Glucosylceramidase precursor (EC 3.2.1.45).
JD039095 - Sequence 20119 from Patent EP1572962.
AK300876 - Homo sapiens cDNA FLJ56157 complete cds, highly similar to Glucosylceramidase precursor (EC 3.2.1.45).
JD340180 - Sequence 321204 from Patent EP1572962.
JD044468 - Sequence 25492 from Patent EP1572962.
JD511909 - Sequence 492933 from Patent EP1572962.
AK300186 - Homo sapiens cDNA FLJ51780 complete cds, highly similar to Glucosylceramidase precursor (EC 3.2.1.45).
KJ690771 - Homo sapiens clone 2G glucosylceramidase (GBA) mRNA, complete cds.
AK312502 - Homo sapiens cDNA, FLJ92865, Homo sapiens glucosidase, beta; acid (includes glucosylceramidase)(GBA), mRNA.
KJ891223 - Synthetic construct Homo sapiens clone ccsbBroadEn_00617 GBA gene, encodes complete protein.
KR709321 - Synthetic construct Homo sapiens clone CCSBHm_00000006 GBA (GBA) mRNA, encodes complete protein.
KR709322 - Synthetic construct Homo sapiens clone CCSBHm_00000073 GBA (GBA) mRNA, encodes complete protein.
KR709323 - Synthetic construct Homo sapiens clone CCSBHm_00000113 GBA (GBA) mRNA, encodes complete protein.
KR709324 - Synthetic construct Homo sapiens clone CCSBHm_00000231 GBA (GBA) mRNA, encodes complete protein.
AB527624 - Synthetic construct DNA, clone: pF1KB3573, Homo sapiens GBA gene for glucosidase, beta, without stop codon, in Flexi system.
AK301879 - Homo sapiens cDNA FLJ50423 complete cds, highly similar to Glucosylceramidase precursor (EC 3.2.1.45).
DL491709 - Novel nucleic acids.
DL490290 - Novel nucleic acids.
AK311242 - Homo sapiens cDNA, FLJ18284.
JD439832 - Sequence 420856 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P04062 (Reactome details) participates in the following event(s):

R-HSA-390470 Association of CCT/TriC with other substrates during biosynthesis (unknown chaperone)
R-HSA-1605591 Glucosylceramidase cleaves the glucosidic bond of glucocerebroside to form ceramide
R-HSA-390471 Association of TriC/CCT with target proteins during biosynthesis
R-HSA-1660662 Glycosphingolipid metabolism
R-HSA-390466 Chaperonin-mediated protein folding
R-HSA-428157 Sphingolipid metabolism
R-HSA-391251 Protein folding
R-HSA-556833 Metabolism of lipids
R-HSA-392499 Metabolism of proteins
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A8K796, B7Z5G2, B7Z6S1, ENST00000327247.1, ENST00000327247.2, ENST00000327247.3, ENST00000327247.4, ENST00000327247.5, ENST00000327247.6, ENST00000327247.7, ENST00000327247.8, GBA, GBA1 , GBA1_HUMAN, GC, GLUC, J3KQG4, J3KQK9, NM_001005742, P04062, Q16545, Q4VX22, Q6I9R6, Q9UMJ8, uc317sfv.1
UCSC ID: ENST00000327247.9_4
RefSeq Accession: NM_001005741.3
Protein: P04062 (aka GLCM_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene GBA1:
gaucher (Gaucher Disease)
parkinson-overview (Parkinson Disease Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.