Human Gene FTL (ENST00000331825.11_4) from GENCODE V47lift37
  Description: ferritin light chain (from RefSeq NM_000146.4)
Gencode Transcript: ENST00000331825.11_4
Gencode Gene: ENSG00000087086.16_9
Transcript (Including UTRs)
   Position: hg19 chr19:49,468,566-49,470,136 Size: 1,571 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr19:49,468,765-49,469,992 Size: 1,228 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:49,468,566-49,470,136)mRNA (may differ from genome)Protein (175 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FRIL_HUMAN
DESCRIPTION: RecName: Full=Ferritin light chain; Short=Ferritin L subunit;
FUNCTION: Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).
SUBUNIT: Oligomer of 24 subunits. There are two types of subunits: L (light) chain and H (heavy) chain. The major chain can be light or heavy, depending on the species and tissue type. The functional molecule forms a roughly spherical shell with a diameter of 12 nm and contains a central cavity into which the insoluble mineral iron core is deposited. Iron enters the spherical protein shell through pores that are formed between subunits. Mutations leading to truncation or the addition of extra residues at the C-terminus interfere with normal pore formation and with iron accumulation.
INTERACTION: Self; NbExp=5; IntAct=EBI-713279, EBI-713279;
DISEASE: Defects in FTL are the cause of hereditary hyperferritinemia-cataract syndrome (HHCS) [MIM:600886]. It is an autosomal dominant disease characterized by early-onset bilateral cataract. Affected patients have elevated level of circulating ferritin. HHCS is caused by mutations in the iron responsive element (IRE) of the FTL gene.
DISEASE: Defects in FTL are the cause of neurodegeneration with brain iron accumulation type 3 (NBIA3) [MIM:606159]; also known as adult-onset basal ganglia disease. It is a movement disorder with heterogeneous presentations starting in the fourth to sixth decade. It is characterized by a variety of neurological signs including parkinsonism, ataxia, corticospinal signs, mild nonprogressive cognitive deficit and episodic psychosis. It is linked with decreased serum ferritin levels.
SIMILARITY: Belongs to the ferritin family.
SIMILARITY: Contains 1 ferritin-like diiron domain.
SEQUENCE CAUTION: Sequence=CAE11873.1; Type=Erroneous initiation;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/FTL";
WEB RESOURCE: Name=Wikipedia; Note=Ferritin entry; URL="http://en.wikipedia.org/wiki/Ferritin";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FTL
Diseases sorted by gene-association score: neurodegeneration with brain iron accumulation 3* (1700), hyperferritinemia-cataract syndrome* (1692), l-ferritin deficiency, dominant and recessive* (1250), genetic hyperferritinemia without iron overload* (350), cataract (23), neurodegeneration with brain iron accumulation (20), basal ganglia disease (12), hemosiderosis (8), hemochromatosis (7), tularemia (7), pneumonic tularemia (7), infantile neuroaxonal dystrophy 1 (6), movement disease (5), neurodegeneration with brain iron accumulation 1 (5), choreatic disease (5), autosomal dominant disease (5), deficiency anemia (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6119.94 RPKM in Whole Blood
Total median expression: 102951.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -60.50199-0.304 Picture PostScript Text
3' UTR -30.70144-0.213 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001519 - Ferritin
IPR009040 - Ferritin-like_diiron
IPR012347 - Ferritin-rel
IPR009078 - Ferritin/RNR-like
IPR014034 - Ferritin_CS
IPR008331 - Ferritin_DPS_dom

Pfam Domains:
PF00210 - Ferritin-like domain

SCOP Domains:
47240 - Ferritin-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2FFX - X-ray MuPIT 2FG4 - X-ray MuPIT 2FG8 - X-ray MuPIT 3HX2 - X-ray 3HX5 - X-ray 3HX7 - X-ray 3KXU - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P02792
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005506 iron ion binding
GO:0005515 protein binding
GO:0008199 ferric iron binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding

Biological Process:
GO:0006826 iron ion transport
GO:0006879 cellular iron ion homeostasis
GO:0006880 intracellular sequestering of iron ion
GO:0043312 neutrophil degranulation
GO:0055072 iron ion homeostasis

Cellular Component:
GO:0005576 extracellular region
GO:0005829 cytosol
GO:0008043 intracellular ferritin complex
GO:0016020 membrane
GO:0035578 azurophil granule lumen
GO:0044754 autolysosome
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK311773 - Homo sapiens cDNA, FLJ92034, highly similar to Homo sapiens ferritin, light polypeptide (FTL), mRNA.
AK026534 - Homo sapiens cDNA: FLJ22881 fis, clone KAT03571, highly similar to HUMFERL Human ferritin L chain mRNA.
AY207005 - Homo sapiens ferritin-like protein mRNA, complete cds.
BC013928 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone MGC:24228 IMAGE:3839120), complete cds.
BC016346 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone MGC:24392 IMAGE:4066010), complete cds.
BC016354 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone MGC:24480 IMAGE:4092360), complete cds.
BC021670 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone MGC:22710 IMAGE:4051089), complete cds.
AK130191 - Homo sapiens cDNA FLJ26681 fis, clone MPG04585, highly similar to Ferritin light chain.
AK131048 - Homo sapiens cDNA FLJ29014 fis, clone LNF06154, highly similar to Ferritin light chain.
AK131050 - Homo sapiens cDNA FLJ29016 fis, clone MPG02306, highly similar to Ferritin light chain.
AK307065 - Homo sapiens cDNA, FLJ97013.
BC008441 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone IMAGE:4099066).
BC058820 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone MGC:61835 IMAGE:4049525), complete cds.
BC008439 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone MGC:14642 IMAGE:4093482), complete cds.
BC016715 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone MGC:24401 IMAGE:4067055), complete cds.
BC062708 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone MGC:71996 IMAGE:4774403), complete cds.
LP747423 - Sequence 10 from Patent WO2018009939.
BX571748 - Homo sapiens mRNA; cDNA DKFZp686L19147 (from clone DKFZp686L19147); complete cds.
BC067772 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone IMAGE:5313340), with apparent retained intron.
AK130205 - Homo sapiens cDNA FLJ26695 fis, clone MPG09301, highly similar to Ferritin light chain.
AK131053 - Homo sapiens cDNA FLJ29019 fis, clone MPG08836, highly similar to Ferritin light chain.
BC004245 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone MGC:10465 IMAGE:3615360), complete cds.
GQ891414 - Homo sapiens clone HEL-S-135 epididymis secretory sperm binding protein mRNA, complete cds.
HW581690 - JP 2014513065-A/19: Effective Amounts of (3aR)-1,3a,8-Trimethyl-1,2,3,3a,8,8a-hexahydropyrrolo[2,3 b]indol-5-yl Phenylcarbamate and Methods Thereof.
JC442380 - Sequence 19 from Patent EP2683242.
MA353525 - JP 2018076332-A/19: Effective Amounts of (3aR)-1,3a,8-Trimethyl-1,2,3,3a,8,8a-hexahydropyrrolo[2,3 b]indol-5-yl Phenylcarbamate and Methods Thereof.
HW581696 - JP 2014513065-A/25: Effective Amounts of (3aR)-1,3a,8-Trimethyl-1,2,3,3a,8,8a-hexahydropyrrolo[2,3 b]indol-5-yl Phenylcarbamate and Methods Thereof.
JC442386 - Sequence 25 from Patent EP2683242.
MA353531 - JP 2018076332-A/25: Effective Amounts of (3aR)-1,3a,8-Trimethyl-1,2,3,3a,8,8a-hexahydropyrrolo[2,3 b]indol-5-yl Phenylcarbamate and Methods Thereof.
Y09188 - H.sapiens mRNA for ferritin L-chain.
BC018990 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone MGC:20176 IMAGE:3503710), complete cds.
BC002991 - Homo sapiens ferritin, light polypeptide, mRNA (cDNA clone MGC:3729 IMAGE:2905327), complete cds.
JD560020 - Sequence 541044 from Patent EP1572962.
M11147 - Human ferritin L chain mRNA, complete cds.
JD408046 - Sequence 389070 from Patent EP1572962.
JD500762 - Sequence 481786 from Patent EP1572962.
JD025905 - Sequence 6929 from Patent EP1572962.
JD501774 - Sequence 482798 from Patent EP1572962.
M10119 - Human ferritin light subunit mRNA, complete cds.
DQ896228 - Synthetic construct Homo sapiens clone IMAGE:100010688; FLH191365.01L; RZPDo839C0667D ferritin, light polypeptide (FTL) gene, encodes complete protein.
EU831925 - Synthetic construct Homo sapiens clone HAIB:100066954; DKFZo008C0223 ferritin, light polypeptide protein (FTL) gene, encodes complete protein.
EU832020 - Synthetic construct Homo sapiens clone HAIB:100067049; DKFZo004C0224 ferritin, light polypeptide protein (FTL) gene, encodes complete protein.
DQ892980 - Synthetic construct clone IMAGE:100005610; FLH191369.01X; RZPDo839C0677D ferritin, light polypeptide (FTL) gene, encodes complete protein.
AB528331 - Synthetic construct DNA, clone: pF1KB6836, Homo sapiens FTL gene for ferritin, light polypeptide, without stop codon, in Flexi system.
KJ905750 - Synthetic construct Homo sapiens clone ccsbBroadEn_15420 FTL gene, encodes complete protein.
CU678630 - Synthetic construct Homo sapiens gateway clone IMAGE:100020165 5' read FTL mRNA.
KJ905748 - Synthetic construct Homo sapiens clone ccsbBroadEn_15418 FTL gene, encodes complete protein.
KJ905749 - Synthetic construct Homo sapiens clone ccsbBroadEn_15419 FTL gene, encodes complete protein.
KJ891200 - Synthetic construct Homo sapiens clone ccsbBroadEn_00594 FTL gene, encodes complete protein.
KJ896832 - Synthetic construct Homo sapiens clone ccsbBroadEn_06226 FTL gene, encodes complete protein.
KJ896833 - Synthetic construct Homo sapiens clone ccsbBroadEn_06227 FTL gene, encodes complete protein.
KR709954 - Synthetic construct Homo sapiens clone CCSBHm_00008429 FTL (FTL) mRNA, encodes complete protein.
KR709955 - Synthetic construct Homo sapiens clone CCSBHm_00008430 FTL (FTL) mRNA, encodes complete protein.
KR709956 - Synthetic construct Homo sapiens clone CCSBHm_00008431 FTL (FTL) mRNA, encodes complete protein.
KR709957 - Synthetic construct Homo sapiens clone CCSBHm_00008432 FTL (FTL) mRNA, encodes complete protein.
CR456715 - Homo sapiens full open reading frame cDNA clone RZPDo834G103D for gene FTL, ferritin, light polypeptide; complete cds, incl. stopcodon.
AY466472 - Homo sapiens ferritin light polypeptide variant (FTL) mRNA, complete cds.
M12938 - Human ferritin light subunit mRNA, partial cds.
JD019776 - Sequence 800 from Patent EP1572962.
LF336178 - JP 2014500723-A/143681: Polycomb-Associated Non-Coding RNAs.
AF147331 - Homo sapiens full length insert cDNA clone YB24D08.
JD026851 - Sequence 7875 from Patent EP1572962.
JD026853 - Sequence 7877 from Patent EP1572962.
JD026852 - Sequence 7876 from Patent EP1572962.
JD023019 - Sequence 4043 from Patent EP1572962.
JD023020 - Sequence 4044 from Patent EP1572962.
JD019007 - Sequence 31 from Patent EP1572962.
JD028836 - Sequence 9860 from Patent EP1572962.
JD028558 - Sequence 9582 from Patent EP1572962.
JD020549 - Sequence 1573 from Patent EP1572962.
JD033546 - Sequence 14570 from Patent EP1572962.
DQ591443 - Homo sapiens piRNA piR-58555, complete sequence.
JD020550 - Sequence 1574 from Patent EP1572962.
DL490432 - Novel nucleic acids.
JD213772 - Sequence 194796 from Patent EP1572962.
JD146854 - Sequence 127878 from Patent EP1572962.
MA571755 - JP 2018138019-A/143681: Polycomb-Associated Non-Coding RNAs.
MB486563 - JP 2019531699-A/10: METHODS FOR DIAGNOSING AND TREATING CANCER.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P02792 (Reactome details) participates in the following event(s):

R-HSA-6798751 Exocytosis of azurophil granule lumen proteins
R-HSA-434362 Recruitment Of Cytoplasmic Proteins To Vesicles
R-HSA-1562626 Ferritin Complex oxidises 4Fe2+ to Fe(3+)O(OH)
R-HSA-2187266 SCARA5 binds ligands
R-HSA-6798695 Neutrophil degranulation
R-HSA-432722 Golgi Associated Vesicle Biogenesis
R-HSA-168249 Innate Immune System
R-HSA-421837 Clathrin derived vesicle budding
R-HSA-917937 Iron uptake and transport
R-HSA-3000480 Scavenging by Class A Receptors
R-HSA-168256 Immune System
R-HSA-199992 trans-Golgi Network Vesicle Budding
R-HSA-382551 Transport of small molecules
R-HSA-2173782 Binding and Uptake of Ligands by Scavenger Receptors
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: B2R4B9, ENST00000331825.1, ENST00000331825.10, ENST00000331825.2, ENST00000331825.3, ENST00000331825.4, ENST00000331825.5, ENST00000331825.6, ENST00000331825.7, ENST00000331825.8, ENST00000331825.9, FRIL_HUMAN, NM_000146, P02792, Q6IBT7, Q7Z2W1, Q86WI9, Q8WU07, Q96AU9, Q96CU0, Q9BTZ8, uc317thp.1, uc317thp.2
UCSC ID: ENST00000331825.11_4
RefSeq Accession: NM_000146.4
Protein: P02792 (aka FRIL_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene FTL:
dystonia-ov (Hereditary Dystonia Overview)
nbia-ov (Neurodegeneration with Brain Iron Accumulation Disorders Overview)
neuroferritin (Neuroferritinopathy)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.