Human Gene FBLN1 (ENST00000327858.11_9) from GENCODE V47lift37
  Description: fibulin 1, transcript variant D (from RefSeq NM_006486.3)
Gencode Transcript: ENST00000327858.11_9
Gencode Gene: ENSG00000077942.19_16
Transcript (Including UTRs)
   Position: hg19 chr22:45,898,763-45,997,015 Size: 98,253 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg19 chr22:45,898,866-45,996,326 Size: 97,461 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:45,898,763-45,997,015)mRNA (may differ from genome)Protein (703 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FBLN1_HUMAN
DESCRIPTION: RecName: Full=Fibulin-1; Short=FIBL-1; Flags: Precursor;
FUNCTION: Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes. Has been implicated in a role in cellular transformation and tumor invasion, it appears to be a tumor suppressor. May play a role in haemostasis and thrombosis owing to its ability to bind fibrinogen and incorporate into clots. Could play a significant role in modulating the neurotrophic activities of APP, particularly soluble APP.
SUBUNIT: Homomultimerizes and interacts with various extracellular matrix components such as FN1, LAMA1, LAMA2, NID, ACAN, CSPG2 and type IV collagen. Interacts also with APP, NOV, FGB and HPV type 16, HPV type 18, HPV type 31 and BPV type 1 E6 proteins. Interacts with FBLN7 (By similarity).
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix.
TISSUE SPECIFICITY: Isoform A and isoform B are only expressed in placenta. Isoform C and isoform D are expressed in a variety of tissues and cultured cells.
DEVELOPMENTAL STAGE: Widely expressed during embryonic development. Prominent in the matrix of the leptomeningeal anlage, in basement membranes of the neuroepithelium and the perineurium of peripheral nerves. In embryos of gestational week (gw) 4, staining was observed in the early mesenchymal bone anlagen. In gw 6.5 and 8, all perichondrial structures showed expression but the chondrocytes themselves showed no staining. In gw 10, expression is prominent in the interterritorial matrix surrounding the hypertrophic chondrocytes.
INDUCTION: Expression increased by estrogen in ovarian cancer cells.
DISEASE: Note=A chromosomal aberration involving FBLN1 is found in a complex type of synpolydactyly referred to as 3/3-prime/4 synpolydactyly associated with metacarpal and metatarsal synostoses. Reciprocal translocation t(12;22)(p11.2;q13.3) with C12orf2. Fibroblasts derived from a patient with synpolydactyly displayed alterations in the level of isoform D splice variant incorporated into the ECM and secreted into the conditioned culture medium. By contrast, the expression of isoform C was not perturbed in the patients fibroblasts. Furthermore, no aberrant polypeptides were detected in extracts of cultured patients fibroblasts. The translocation t(12;22) may result in haploinsufficiency of the isoform D splice variant, which could lead to the observed limb malformation.
DISEASE: Note=Elevated expression and altered processing of FBLN1 protein is associated with human breast cancer.
SIMILARITY: Belongs to the fibulin family.
SIMILARITY: Contains 3 anaphylatoxin-like domains.
SIMILARITY: Contains 9 EGF-like domains.
SEQUENCE CAUTION: Sequence=AAG17241.1; Type=Frameshift; Positions=116, 619, 639;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FBLN1
Diseases sorted by gene-association score: synpolydactyly, 3/3'4, associated with metacarpal and metatarsal synostoses* (850), fbln1-related developmental delay-central nervous system anomaly-syndactyly syndrome* (350), vitreoretinal dystrophy (23), synpolydactyly (19), familial osteochondritis dissecans (13), megalencephalic leukoencephalopathy with subcortical cysts (9), osteochondritis dissecans (7), dupuytren contracture (5), breast cancer (2)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 463.31 RPKM in Cervix - Endocervix
Total median expression: 3816.12 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -38.80103-0.377 Picture PostScript Text
3' UTR -224.40689-0.326 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000020 - Anaphylatoxin/fibulin
IPR000742 - EG-like_dom
IPR001881 - EGF-like_Ca-bd
IPR013032 - EGF-like_CS
IPR000152 - EGF-type_Asp/Asn_hydroxyl_site
IPR018097 - EGF_Ca-bd_CS
IPR017048 - Fibulin-1

Pfam Domains:
PF07645 - Calcium-binding EGF domain
PF12662 - Complement Clr-like EGF-like

SCOP Domains:
57196 - EGF/Laminin
57184 - Growth factor receptor domain

ModBase Predicted Comparative 3D Structure on P23142
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001968 fibronectin binding
GO:0005178 integrin binding
GO:0005201 extracellular matrix structural constituent
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0008022 protein C-terminus binding
GO:0016504 peptidase activator activity
GO:0042802 identical protein binding
GO:0044877 macromolecular complex binding
GO:0070051 fibrinogen binding

Biological Process:
GO:0001933 negative regulation of protein phosphorylation
GO:0007162 negative regulation of cell adhesion
GO:0007566 embryo implantation
GO:0010628 positive regulation of gene expression
GO:0010952 positive regulation of peptidase activity
GO:0016032 viral process
GO:0030198 extracellular matrix organization
GO:0048146 positive regulation of fibroblast proliferation
GO:0070373 negative regulation of ERK1 and ERK2 cascade
GO:0072378 blood coagulation, fibrin clot formation
GO:1900025 negative regulation of substrate adhesion-dependent cell spreading
GO:1904188 negative regulation of transformation of host cell by virus
GO:1904237 positive regulation of substrate-dependent cell migration, cell attachment to substrate
GO:2000146 negative regulation of cell motility
GO:2000647 negative regulation of stem cell proliferation
GO:2001202 negative regulation of transforming growth factor-beta secretion
GO:0007229 integrin-mediated signaling pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005604 basement membrane
GO:0005615 extracellular space
GO:0031012 extracellular matrix
GO:0070062 extracellular exosome
GO:0071953 elastic fiber
GO:0005577 fibrinogen complex


-  Descriptions from all associated GenBank mRNAs
  AK075566 - Homo sapiens cDNA PSEC0266 fis, clone NT2RP3003649, highly similar to Homo sapiens fibulin-1D mRNA.
AK300806 - Homo sapiens cDNA FLJ53207 complete cds, highly similar to Homo sapiens fibulin 1 (FBLN1), transcript variant C, mRNA.
AK075460 - Homo sapiens cDNA PSEC0153 fis, clone PLACE1007950, highly similar to FIBULIN-1, ISOFORM C PRECURSOR.
AK316291 - Homo sapiens cDNA, FLJ79190 complete cds, highly similar to Homo sapiens fibulin 1 (FBLN1), transcript variant C, mRNA.
BC022497 - Homo sapiens fibulin 1, mRNA (cDNA clone MGC:26399 IMAGE:4819750), complete cds.
AF217999 - Homo sapiens clone PP213 unknown mRNA.
JD458481 - Sequence 439505 from Patent EP1572962.
X53741 - H.sapiens mRNA for fibulin-1 A.
X53743 - H.sapiens mRNA for fibulin-1 C.
X53742 - H.sapiens mRNA for fibulin-1 B.
U01244 - Homo sapiens fibulin-1D mRNA, complete cds.
AF126110 - Homo sapiens fibulin-1 isoform D precursor, mRNA, complete cds.
DQ894047 - Synthetic construct Homo sapiens clone IMAGE:100008507; FLH166853.01L; RZPDo839E0187D fibulin 1 (FBLN1) gene, encodes complete protein.
AB528743 - Synthetic construct DNA, clone: pF1KB9970, Homo sapiens FBLN1 gene for fibulin 1, without stop codon, in Flexi system.
AK128725 - Homo sapiens cDNA FLJ46892 fis, clone UTERU3019078.
AK093339 - Homo sapiens cDNA FLJ36020 fis, clone TESTI2016509.
JD271244 - Sequence 252268 from Patent EP1572962.
JD566383 - Sequence 547407 from Patent EP1572962.
AK095988 - Homo sapiens cDNA FLJ38669 fis, clone HLUNG2009215.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P23142 (Reactome details) participates in the following event(s):

R-HSA-1592387 Fibulin binds elastic fibres
R-HSA-2537665 Fibulin-1 and -2 bind fibronectin
R-HSA-2328048 Emilin is found in elastic fibres
R-HSA-2161282 Elastic fibres bind associated proteins
R-HSA-2129379 Molecules associated with elastic fibres
R-HSA-1566948 Elastic fibre formation
R-HSA-1474244 Extracellular matrix organization

-  Other Names for This Gene
  Alternate Gene Symbols: B0QY42, B1AHL4, ENST00000327858.1, ENST00000327858.10, ENST00000327858.2, ENST00000327858.3, ENST00000327858.4, ENST00000327858.5, ENST00000327858.6, ENST00000327858.7, ENST00000327858.8, ENST00000327858.9, FBLN1_HUMAN, NM_006486, P23142, P23143, P23144, P37888, PP213, Q5TIC4, Q8TBH8, Q9HBQ5, Q9UC21, Q9UGR4, Q9UH41, uc317sjl.1, uc317sjl.2
UCSC ID: ENST00000327858.11_9
RefSeq Accession: NM_006486.3
Protein: P23142 (aka FBLN1_HUMAN or FBL1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.