Human Gene FANCB (ENST00000650831.1_8) from GENCODE V47lift37
  Description: FA complementation group B, transcript variant 3 (from RefSeq NM_001324162.2)
Gencode Transcript: ENST00000650831.1_8
Gencode Gene: ENSG00000181544.16_15
Transcript (Including UTRs)
   Position: hg19 chrX:14,861,527-14,891,191 Size: 29,665 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg19 chrX:14,861,689-14,883,632 Size: 21,944 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:14,861,527-14,891,191)mRNA (may differ from genome)Protein (859 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: FANCB_HUMAN
DESCRIPTION: RecName: Full=Fanconi anemia group B protein; Short=Protein FACB; AltName: Full=Fanconi anemia-associated polypeptide of 95 kDa; Short=FAAP95;
FUNCTION: DNA repair protein required for FANCD2 ubiquitination.
SUBUNIT: Belongs to the multisubunit FA complex composed of FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9 and FANCM. The complex is not found in FA patients.
SUBCELLULAR LOCATION: Nucleus.
DISEASE: Defects in FANCB are the cause of Fanconi anemia complementation group B (FANCB) [MIM:300514]. It is a disorder affecting all bone marrow elements and resulting in anemia, leukopenia and thrombopenia. It is associated with cardiac, renal and limb malformations, dermal pigmentary changes, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage) and defective DNA repair. Some severe FANCB cases manifest features of VACTERL syndrome with hydrocephalus.
SEQUENCE CAUTION: Sequence=AAH43596.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=AAH55411.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence;
WEB RESOURCE: Name=Fanconi Anemia Mutation Database; URL="http://www.rockefeller.edu/fanconi/mutate/jumpb.html";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/FANCB";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FANCB
Diseases sorted by gene-association score: fanconi anemia, complementation group b* (964), vacterl with hydrocephalus* (368), fanconi anemia, complementation group a* (101), vacterl with hydrocephalus, fancb-related* (100), fancb-related fanconi anemia* (100), hydrocephalus (16), cloacal exstrophy (7), baller-gerold syndrome (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -69.60275-0.253 Picture PostScript Text
3' UTR -31.00162-0.191 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  SCOP Domains:
48371 - ARM repeat

ModBase Predicted Comparative 3D Structure on Q8NB91
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0006281 DNA repair
GO:0006974 cellular response to DNA damage stimulus
GO:0036297 interstrand cross-link repair

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0043240 Fanconi anaemia nuclear complex


-  Descriptions from all associated GenBank mRNAs
  AK091383 - Homo sapiens cDNA FLJ34064 fis, clone FCBBF3000518.
AX746948 - Sequence 473 from Patent EP1308459.
BC136558 - Homo sapiens Fanconi anemia, complementation group B, mRNA (cDNA clone MGC:168171 IMAGE:9020548), complete cds.
BC136560 - Homo sapiens Fanconi anemia, complementation group B, mRNA (cDNA clone MGC:168173 IMAGE:9020550), complete cds.
JD552568 - Sequence 533592 from Patent EP1572962.
LF211726 - JP 2014500723-A/19229: Polycomb-Associated Non-Coding RNAs.
KJ891144 - Synthetic construct Homo sapiens clone ccsbBroadEn_00538 FANCB gene, encodes complete protein.
BC043596 - Homo sapiens Fanconi anemia, complementation group B, mRNA (cDNA clone IMAGE:6013939), partial cds.
LF383159 - JP 2014500723-A/190662: Polycomb-Associated Non-Coding RNAs.
LF383157 - JP 2014500723-A/190660: Polycomb-Associated Non-Coding RNAs.
LF383154 - JP 2014500723-A/190657: Polycomb-Associated Non-Coding RNAs.
LF383153 - JP 2014500723-A/190656: Polycomb-Associated Non-Coding RNAs.
BC055411 - Homo sapiens Fanconi anemia, complementation group B, mRNA (cDNA clone IMAGE:5811610), partial cds.
LF383152 - JP 2014500723-A/190655: Polycomb-Associated Non-Coding RNAs.
JD314683 - Sequence 295707 from Patent EP1572962.
LF383151 - JP 2014500723-A/190654: Polycomb-Associated Non-Coding RNAs.
JD466169 - Sequence 447193 from Patent EP1572962.
MA618736 - JP 2018138019-A/190662: Polycomb-Associated Non-Coding RNAs.
MA618734 - JP 2018138019-A/190660: Polycomb-Associated Non-Coding RNAs.
MA618731 - JP 2018138019-A/190657: Polycomb-Associated Non-Coding RNAs.
MA618730 - JP 2018138019-A/190656: Polycomb-Associated Non-Coding RNAs.
MA618729 - JP 2018138019-A/190655: Polycomb-Associated Non-Coding RNAs.
MA618728 - JP 2018138019-A/190654: Polycomb-Associated Non-Coding RNAs.
MA447303 - JP 2018138019-A/19229: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_atrbrcaPathway - Role of BRCA1, BRCA2 and ATR in Cancer Susceptibility

Reactome (by CSHL, EBI, and GO)

Protein Q8NB91 (Reactome details) participates in the following event(s):

R-HSA-6785126 FA core complex assembles at DNA interstrand crosslinks (ICLs)
R-HSA-6786155 POLN binds ICL-DNA
R-HSA-6785342 FANCD2:FANCI complex and UBE2T bind ICL-DNA associated with the FA core complex
R-HSA-6786171 FANCD2 deubiquitination by USP1:WDR48
R-HSA-6788385 The complex of ATR and ATRIP is recruited to ICL-DNA
R-HSA-6785732 DNA nucleases bind monoubiquitinated ID2 complex
R-HSA-6785361 Monoubiquitination of FANCD2:FANCI
R-HSA-6788392 ATR phosphorylates RPA2, FANCI, FANCD2 and FANCM at ICL-DNA
R-HSA-6783310 Fanconi Anemia Pathway
R-HSA-73894 DNA Repair

-  Other Names for This Gene
  Alternate Gene Symbols: B2RMZ4, FANCB_HUMAN, NM_001324162, Q7Z2U2, Q86XG1, Q8NB91, uc328scs.1, uc328scs.2
UCSC ID: ENST00000650831.1_8
RefSeq Accession: NM_001018113.3
Protein: Q8NB91 (aka FANCB_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene FANCB:
fa (Fanconi Anemia)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.