Human Gene FAM120A (ENST00000277165.11_6) from GENCODE V47lift37
  Description: family with sequence similarity 120A, transcript variant 1 (from RefSeq NM_014612.5)
Gencode Transcript: ENST00000277165.11_6
Gencode Gene: ENSG00000048828.18_10
Transcript (Including UTRs)
   Position: hg19 chr9:96,213,967-96,328,394 Size: 114,428 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr9:96,214,198-96,326,822 Size: 112,625 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:96,213,967-96,328,394)mRNA (may differ from genome)Protein (1118 aa)
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-  Comments and Description Text from UniProtKB
  ID: F120A_HUMAN
DESCRIPTION: RecName: Full=Constitutive coactivator of PPAR-gamma-like protein 1; AltName: Full=Oxidative stress-associated Src activator; AltName: Full=Protein FAM120A;
FUNCTION: May participate in mRNA transport in the cytoplasm (By similarity). Critical component of the oxidative stress-induced survival signaling. Activates src family kinases and acts as a scaffolding protein enabling src family kinases to phosphorylate and activate PI3-kinase. Binds RNA and promotes the secretion of IGF-II. May play a pivotal role in the progression of scirrhous- type gastric cancer by supporting cancer cell survival in environments with various oxidative stresses.
SUBUNIT: Interacts with PURA (By similarity). Interacts with YES1, SRC, FYN. Upon tyrosine phosphorylation, interacts with PIK3R1.
SUBCELLULAR LOCATION: Cytoplasm. Cell membrane; Peripheral membrane protein; Cytoplasmic side. Note=Translocates to plasma membrane upon ultraviolet exposure.
TISSUE SPECIFICITY: Ubiquitously expressed. Highly expressed in scirrhous-type gastric cancer tissues compared with normal gastric mucosa (at protein level).
PTM: Arg-982 is dimethylated, probably to asymmetric dimethylarginine.
PTM: Phosphorylated on tyrosine by src family kinases upon ultraviolet exposure.
SIMILARITY: Belongs to the constitutive coactivator of PPAR-gamma family.
SEQUENCE CAUTION: Sequence=AAF72866.1; Type=Frameshift; Positions=1055;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: FAM120A
Diseases sorted by gene-association score: retinitis pigmentosa 59 (7), myiasis (7), achondrogenesis (7), duodenal obstruction (7)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 35.14 RPKM in Cells - Cultured fibroblasts
Total median expression: 1032.80 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -106.40231-0.461 Picture PostScript Text
3' UTR -315.501572-0.201 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026783 - Coact_PPARg-like_1

SCOP Domains:
88723 - PIN domain-like

ModBase Predicted Comparative 3D Structure on Q9NZB2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  BC075701 - Homo sapiens cDNA clone IMAGE:30344681, containing frame-shift errors.
BC098584 - Homo sapiens family with sequence similarity 120A, mRNA (cDNA clone MGC:111527 IMAGE:30531603), complete cds.
AF214738 - Homo sapiens C9orf10b mRNA, complete cds, alternatively spliced.
AF214737 - Homo sapiens C9orf10a (C9orf10) mRNA, complete cds, alternatively spliced.
BC111736 - Homo sapiens family with sequence similarity 120A, mRNA (cDNA clone MGC:133257 IMAGE:40036337), complete cds.
KJ893340 - Synthetic construct Homo sapiens clone ccsbBroadEn_02734 FAM120A gene, encodes complete protein.
KJ898457 - Synthetic construct Homo sapiens clone ccsbBroadEn_07851 FAM120A gene, encodes complete protein.
D80005 - Homo sapiens KIAA0183 mRNA, complete cds.
BC007879 - Homo sapiens family with sequence similarity 120A, mRNA (cDNA clone IMAGE:3938062), partial cds.
BC034935 - Homo sapiens family with sequence similarity 120A, mRNA (cDNA clone IMAGE:4908023), containing frame-shift errors.
AY266457 - Homo sapiens C90rf10-like protein mRNA, partial cds; alternatively spliced.
AF055017 - Homo sapiens clone 24815 unknown mRNA, partial cds.
AK091785 - Homo sapiens cDNA FLJ34466 fis, clone HLUNG2003162.
AX747183 - Sequence 708 from Patent EP1308459.
AY450393 - Homo sapiens DNA polymerase-transactivated protein 5 (DNAPTP5) mRNA, complete cds.
JD529841 - Sequence 510865 from Patent EP1572962.
KY559104 - Homo sapiens HBVPTPAP lncRNA, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NGU0, C4AMC6, C9orf10, ENST00000277165.1, ENST00000277165.10, ENST00000277165.2, ENST00000277165.3, ENST00000277165.4, ENST00000277165.5, ENST00000277165.6, ENST00000277165.7, ENST00000277165.8, ENST00000277165.9, F120A_HUMAN, KIAA0183, NM_014612, O60649, OSSA , Q14688, Q4VXF4, Q4VXF5, Q4VXG2, Q86V69, Q96I21, Q9NZB1, Q9NZB2, uc317jmg.1, uc317jmg.2
UCSC ID: ENST00000277165.11_6
RefSeq Accession: NM_014612.5
Protein: Q9NZB2 (aka F120A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.