Human Gene EYA4 (ENST00000355286.12_9) from GENCODE V47lift37
  Description: EYA transcriptional coactivator and phosphatase 4, transcript variant 1 (from RefSeq NM_004100.5)
Gencode Transcript: ENST00000355286.12_9
Gencode Gene: ENSG00000112319.21_17
Transcript (Including UTRs)
   Position: hg19 chr6:133,562,495-133,853,266 Size: 290,772 Total Exon Count: 20 Strand: +
Coding Region
   Position: hg19 chr6:133,595,919-133,849,943 Size: 254,025 Coding Exon Count: 19 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:133,562,495-133,853,266)mRNA (may differ from genome)Protein (639 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
Human Cortex Gene ExpressionMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: EYA4_HUMAN
DESCRIPTION: RecName: Full=Eyes absent homolog 4; EC=3.1.3.48;
FUNCTION: Tyrosine phosphatase that specifically dephosphorylates 'Tyr-142' of histone H2AX (H2AXY142ph). 'Tyr-142' phosphorylation of histone H2AX plays a central role in DNA repair and acts as a mark that distinguishes between apoptotic and repair responses to genotoxic stress. Promotes efficient DNA repair by dephosphorylating H2AX, promoting the recruitment of DNA repair complexes containing MDC1. Its function as histone phosphatase probably explains its role in transcription regulation during organogenesis. May be involved in development of the eye (By similarity).
CATALYTIC ACTIVITY: Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate.
COFACTOR: Binds 1 Mg(2+) ion per subunit (By similarity).
SUBCELLULAR LOCATION: Cytoplasm (By similarity). Nucleus (By similarity).
TISSUE SPECIFICITY: Highly expressed in heart and skeletal muscle.
DISEASE: Defects in EYA4 are the cause of deafness autosomal dominant type 10 (DFNA10) [MIM:601316]. DFNA10 is a form of sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information.
DISEASE: Defects in EYA4 are the cause of cardiomyopathy dilated type 1J (CMD1J) [MIM:605362]. Dilated cardiomyopathy is a disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death.
SIMILARITY: Belongs to the HAD-like hydrolase superfamily. EYA family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/EYA4";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EYA4
Diseases sorted by gene-association score: cardiomyopathy, dilated, 1j* (1269), deafness, autosomal dominant 10* (1238), eya4-related dilated cardiomyopathy* (500), dfna10 nonsyndromic hearing loss and deafness* (100), autosomal dominant non-syndromic sensorineural deafness type dfna* (61), deafness, autosomal dominant 44 (9), deafness, autosomal dominant 28 (9), dilated cardiomyopathy (8), sensorineural hearing loss (8), deafness, autosomal dominant 13 (7), autosomal dominant nonsyndromic deafness (7), usher syndrome, type 2a (7), autosomal dominant nonsyndromic deafness 12 (7), cardiomyopathy (4), nonsyndromic deafness (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.09 RPKM in Muscle - Skeletal
Total median expression: 34.30 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -163.50458-0.357 Picture PostScript Text
3' UTR -834.403323-0.251 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006545 - EYA

Pfam Domains:
PF00702 - haloacid dehalogenase-like hydrolase

SCOP Domains:
56784 - HAD-like

ModBase Predicted Comparative 3D Structure on O95677
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0004725 protein tyrosine phosphatase activity
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0006281 DNA repair
GO:0006325 chromatin organization
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006974 cellular response to DNA damage stimulus
GO:0007275 multicellular organism development
GO:0007601 visual perception
GO:0007605 sensory perception of sound
GO:0009653 anatomical structure morphogenesis
GO:0016576 histone dephosphorylation
GO:0030154 cell differentiation
GO:0035335 peptidyl-tyrosine dephosphorylation
GO:0045739 positive regulation of DNA repair
GO:2001240 negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK301950 - Homo sapiens cDNA FLJ55557 complete cds, highly similar to Eyes absent homolog 4 (EC 3.1.3.48).
AK295798 - Homo sapiens cDNA FLJ61280 complete cds, highly similar to Eyes absent homolog 4 (EC 3.1.3.48).
Y17114 - Homo sapiens mRNA for EYA4 protein, complete CDS.
BC041063 - Homo sapiens eyes absent homolog 4 (Drosophila), mRNA (cDNA clone MGC:52237 IMAGE:5458911), complete cds.
AK299378 - Homo sapiens cDNA FLJ61361 complete cds, highly similar to Eyes absent homolog 4 (EC 3.1.3.48).
KJ896783 - Synthetic construct Homo sapiens clone ccsbBroadEn_06177 EYA4 gene, encodes complete protein.
EU446856 - Synthetic construct Homo sapiens clone IMAGE:100069915; IMAGE:100012065; FLH257076.01L eyes absent homolog 4 (Drosophila) (EYA4) gene, encodes complete protein.
KU178044 - Homo sapiens eyes absent-like protein 4 isoform 1 (EYA4) mRNA, partial cds.
KU178045 - Homo sapiens eyes absent-like protein 4 isoform 2 (EYA4) mRNA, partial cds, alternatively spliced.
BC014193 - Homo sapiens eyes absent homolog 4 (Drosophila), mRNA (cDNA clone IMAGE:4110403), partial cds.
BC030588 - Homo sapiens eyes absent homolog 4 (Drosophila), mRNA (cDNA clone IMAGE:4824107).
JD116675 - Sequence 97699 from Patent EP1572962.
JD175311 - Sequence 156335 from Patent EP1572962.
JD202860 - Sequence 183884 from Patent EP1572962.
JD465288 - Sequence 446312 from Patent EP1572962.
JD375241 - Sequence 356265 from Patent EP1572962.
JD464719 - Sequence 445743 from Patent EP1572962.
JD151544 - Sequence 132568 from Patent EP1572962.
JD164658 - Sequence 145682 from Patent EP1572962.
JD276357 - Sequence 257381 from Patent EP1572962.
JD183029 - Sequence 164053 from Patent EP1572962.
JD164489 - Sequence 145513 from Patent EP1572962.
AJ007994 - Homo sapiens MRNA for EYA4 protein, exon 19 splice form.
AJ007993 - Homo sapiens mRNA for EYA4 protein, exon 20 splice form.
JD229184 - Sequence 210208 from Patent EP1572962.
JD263696 - Sequence 244720 from Patent EP1572962.
JD501912 - Sequence 482936 from Patent EP1572962.
JD308734 - Sequence 289758 from Patent EP1572962.
JD563440 - Sequence 544464 from Patent EP1572962.
JD055829 - Sequence 36853 from Patent EP1572962.
JD067121 - Sequence 48145 from Patent EP1572962.
JD344299 - Sequence 325323 from Patent EP1572962.
JD086904 - Sequence 67928 from Patent EP1572962.
JD263160 - Sequence 244184 from Patent EP1572962.
JD301234 - Sequence 282258 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O95677 (Reactome details) participates in the following event(s):

R-HSA-5683964 ATM phosphorylates EYA1-4
R-HSA-5683967 EYA1-4 dephosphorylates tyrosine Y142 of H2AFX
R-HSA-5693565 Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
R-HSA-5693606 DNA Double Strand Break Response
R-HSA-5693532 DNA Double-Strand Break Repair
R-HSA-73894 DNA Repair

-  Other Names for This Gene
  Alternate Gene Symbols: B7Z7F7, ENST00000355286.1, ENST00000355286.10, ENST00000355286.11, ENST00000355286.2, ENST00000355286.3, ENST00000355286.4, ENST00000355286.5, ENST00000355286.6, ENST00000355286.7, ENST00000355286.8, ENST00000355286.9, EYA4_HUMAN, NM_004100, O95464, O95677, O95679, Q8IW39, Q9NTR7, uc317zac.1, uc317zac.2
UCSC ID: ENST00000355286.12_9
RefSeq Accession: NM_004100.5
Protein: O95677 (aka EYA4_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene EYA4:
dcm-ov (Dilated Cardiomyopathy Overview)
deafness-overview (Genetic Hearing Loss Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.