Human Gene ECD (ENST00000372979.9_8) from GENCODE V47lift37
  Description: ecdysoneless cell cycle regulator, transcript variant 1 (from RefSeq NM_007265.3)
Gencode Transcript: ENST00000372979.9_8
Gencode Gene: ENSG00000122882.11_10
Transcript (Including UTRs)
   Position: hg19 chr10:74,893,426-74,927,766 Size: 34,341 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr10:74,894,341-74,923,695 Size: 29,355 Coding Exon Count: 13 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:74,893,426-74,927,766)mRNA (may differ from genome)Protein (644 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SGT1_HUMAN
DESCRIPTION: RecName: Full=Protein SGT1; Short=hSGT1; AltName: Full=Protein ecdysoneless homolog; AltName: Full=Suppressor of GCR2;
FUNCTION: Novel regulator of p53 stability and function. May also be a transcriptional activator required for the expression of glycolytic genes.
SUBUNIT: Interacts with TP53 and MDM2.
SUBCELLULAR LOCATION: Cytoplasm. Nucleus.
TISSUE SPECIFICITY: Highly expressed in muscle and heart.
SIMILARITY: Belongs to the SGT1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.02 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 363.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -56.30156-0.361 Picture PostScript Text
3' UTR -156.80915-0.171 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR010770 - SGT1

Pfam Domains:
PF07093 - SGT1 protein

ModBase Predicted Comparative 3D Structure on O95905
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003713 transcription coactivator activity
GO:0005515 protein binding
GO:0035035 histone acetyltransferase binding

Biological Process:
GO:0006110 regulation of glycolytic process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter
GO:0006397 mRNA processing
GO:0008283 cell proliferation
GO:0008380 RNA splicing
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:2000045 regulation of G1/S transition of mitotic cell cycle

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0097255 R2TP complex


-  Descriptions from all associated GenBank mRNAs
  BC103720 - Homo sapiens ecdysoneless homolog (Drosophila), mRNA (cDNA clone IMAGE:6163912), containing frame-shift errors.
AK225519 - Homo sapiens mRNA for suppressor of S. cerevisiae gcr2 variant, clone: KAT05277.
AK022616 - Homo sapiens cDNA FLJ12554 fis, clone NT2RM4000741, highly similar to SGT1 protein.
D88208 - Homo sapiens hSGT1 mRNA for hSgt1p, complete cds.
BC000721 - Homo sapiens ecdysoneless homolog (Drosophila), mRNA (cDNA clone MGC:1546 IMAGE:3504956), complete cds.
KJ893277 - Synthetic construct Homo sapiens clone ccsbBroadEn_02671 ECD gene, encodes complete protein.
CR457407 - Homo sapiens full open reading frame cDNA clone RZPDo834C0821D for gene HSGT1, suppressor of S. cerevisiae gcr2; complete cds, incl. stopcodon.
AK315711 - Homo sapiens cDNA, FLJ96810.
DQ892172 - Synthetic construct clone IMAGE:100004802; FLH183668.01X; RZPDo839F03142D ecdysoneless homolog (Drosophila) (ECD) gene, encodes complete protein.
DQ895366 - Synthetic construct Homo sapiens clone IMAGE:100009826; FLH183666.01L; RZPDo839F03141D ecdysoneless homolog (Drosophila) (ECD) gene, encodes complete protein.
AB463597 - Synthetic construct DNA, clone: pF1KB8166, Homo sapiens ECD gene for ecdysoneless homolog, without stop codon, in Flexi system.
CU674358 - Synthetic construct Homo sapiens gateway clone IMAGE:100017753 5' read ECD mRNA.

-  Other Names for This Gene
  Alternate Gene Symbols: C9JX46, E9PAW8, ECD_HUMAN, ENST00000372979.1, ENST00000372979.2, ENST00000372979.3, ENST00000372979.4, ENST00000372979.5, ENST00000372979.6, ENST00000372979.7, ENST00000372979.8, NM_007265, O95905, uc318kjj.1, uc318kjj.2
UCSC ID: ENST00000372979.9_8
RefSeq Accession: NM_007265.3
Protein: O95905 (aka SGT1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.