Human Gene DYNLT3 (ENST00000378578.9_7) from GENCODE V47lift37
  Description: dynein light chain Tctex-type 3 (from RefSeq NM_006520.3)
Gencode Transcript: ENST00000378578.9_7
Gencode Gene: ENSG00000165169.11_9
Transcript (Including UTRs)
   Position: hg19 chrX:37,698,089-37,706,824 Size: 8,736 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chrX:37,699,828-37,706,763 Size: 6,936 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:37,698,089-37,706,824)mRNA (may differ from genome)Protein (116 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DYLT3_HUMAN
DESCRIPTION: RecName: Full=Dynein light chain Tctex-type 3; AltName: Full=Protein 91/23; AltName: Full=T-complex-associated testis-expressed 1-like;
FUNCTION: Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Probably binds BUB3 as part of transport cargo. Required for the efficient progression through mitosis (By similarity).
SUBUNIT: Homodimer. The cytoplasmic dynein 1 complex consists of two catalytic heavy chains (HCs) and a number of non-catalytic subunits presented by intermediate chains (ICs), light intermediate chains (LICs) and light chains (LCs); the composition seems to vary in respect to the IC, LIC and LC composition. The heavy chain homodimer serves as a scaffold for the probable homodimeric assembly of the respective non-catalytic subunits. The ICs and LICs bind directly to the HC dimer and the LCs assemble on the IC dimer. DYNLT1 and DYNLT3 compete for association with dynein IC (DYNC1I1 or DYNC1I2). Self-associates. Interacts with DYNC1I1 and DYNC1I2 (By similarity). Interacts with BUB3. Interacts with SATB1 in nucleus to form complex with matrix attachment regions (MARs) of DNA.
SUBCELLULAR LOCATION: Nucleus. Cytoplasm, cytoskeleton. Chromosome, centromere, kinetochore. Note=Colocalizes with BUB3 at kinetochores specifically during prometaphase.
SIMILARITY: Belongs to the dynein light chain Tctex-type family.
CAUTION: Was originally (PubMed:8004092) thought to be a candidate for RP3.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DYNLT3
Diseases sorted by gene-association score: retinitis pigmentosa (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 28.64 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 655.12 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -24.1061-0.395 Picture PostScript Text
3' UTR -339.941739-0.195 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005334 - Tctex

Pfam Domains:
PF03645 - Tctex-1 family

ModBase Predicted Comparative 3D Structure on P51808
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
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 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003774 motor activity
GO:0005515 protein binding
GO:0042802 identical protein binding

Biological Process:
GO:0007049 cell cycle
GO:0007346 regulation of mitotic cell cycle
GO:0045931 positive regulation of mitotic cell cycle
GO:0051301 cell division

Cellular Component:
GO:0000775 chromosome, centromeric region
GO:0000776 kinetochore
GO:0000777 condensed chromosome kinetochore
GO:0005634 nucleus
GO:0005694 chromosome
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005868 cytoplasmic dynein complex
GO:0005874 microtubule
GO:0030286 dynein complex
GO:0061673 mitotic spindle astral microtubule


-  Descriptions from all associated GenBank mRNAs
  BC000968 - Homo sapiens dynein, light chain, Tctex-type 3, mRNA (cDNA clone MGC:5007 IMAGE:3448623), complete cds.
U02556 - Human RP3 mRNA, complete cds.
JD296449 - Sequence 277473 from Patent EP1572962.
JD113201 - Sequence 94225 from Patent EP1572962.
JD165852 - Sequence 146876 from Patent EP1572962.
JD185766 - Sequence 166790 from Patent EP1572962.
JD499011 - Sequence 480035 from Patent EP1572962.
JD359030 - Sequence 340054 from Patent EP1572962.
JD528990 - Sequence 510014 from Patent EP1572962.
JD490784 - Sequence 471808 from Patent EP1572962.
JD206525 - Sequence 187549 from Patent EP1572962.
JD280362 - Sequence 261386 from Patent EP1572962.
JD359102 - Sequence 340126 from Patent EP1572962.
JD059245 - Sequence 40269 from Patent EP1572962.
CR542213 - Homo sapiens full open reading frame cDNA clone RZPDo834C0525D for gene TCTE1L, t-complex-associated-testis-expressed 1-like; complete cds, incl. stopcodon.
AK311851 - Homo sapiens cDNA, FLJ92116, Homo sapiens t-complex-associated-testis-expressed 1-like (TCTE1L),mRNA.
KJ892261 - Synthetic construct Homo sapiens clone ccsbBroadEn_01655 DYNLT3 gene, encodes complete protein.
GQ129368 - Synthetic construct Homo sapiens clone HAIB:100068694; DKFZo004E0836 dynein, light chain, Tctex-type 3 protein (DYNLT3) gene, partial cds.
GQ129369 - Synthetic construct Homo sapiens clone HAIB:100068597; DKFZo008E0835 dynein, light chain, Tctex-type 3 protein (DYNLT3) gene, complete cds.
CR450320 - Homo sapiens full open reading frame cDNA clone RZPDo834G021D for gene TCTE1L, t-complex-associated-testis-expressed 1-like; complete cds; without stopcodon.

-  Other Names for This Gene
  Alternate Gene Symbols: DYLT3_HUMAN, ENST00000378578.1, ENST00000378578.2, ENST00000378578.3, ENST00000378578.4, ENST00000378578.5, ENST00000378578.6, ENST00000378578.7, ENST00000378578.8, NM_006520, P51808, Q6ICS3, TCTE1L, TCTE1XL, uc318ojq.1, uc318ojq.2
UCSC ID: ENST00000378578.9_7
RefSeq Accession: NM_006520.3
Protein: P51808 (aka DYLT3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.