Human Gene CYP11A1 (ENST00000268053.11_7) from GENCODE V47lift37
  Description: cytochrome P450 family 11 subfamily A member 1, transcript variant 1 (from RefSeq NM_000781.3)
Gencode Transcript: ENST00000268053.11_7
Gencode Gene: ENSG00000140459.18_12
Transcript (Including UTRs)
   Position: hg19 chr15:74,630,103-74,659,987 Size: 29,885 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr15:74,630,313-74,659,926 Size: 29,614 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:74,630,103-74,659,987)mRNA (may differ from genome)Protein (521 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CP11A_HUMAN
DESCRIPTION: RecName: Full=Cholesterol side-chain cleavage enzyme, mitochondrial; EC=1.14.15.6; AltName: Full=CYPXIA1; AltName: Full=Cholesterol desmolase; AltName: Full=Cytochrome P450 11A1; AltName: Full=Cytochrome P450(scc); Flags: Precursor;
FUNCTION: Catalyzes the side-chain cleavage reaction of cholesterol to pregnenolone.
CATALYTIC ACTIVITY: Cholesterol + reduced adrenal ferredoxin + O(2) = pregnenolone + 4-methylpentanal + oxidized adrenal ferredoxin + H(2)O.
COFACTOR: Heme group (By similarity).
PATHWAY: Lipid metabolism; C21-steroid hormone metabolism.
SUBCELLULAR LOCATION: Mitochondrion membrane.
INDUCTION: By 8-bromo cyclic AMP.
DISEASE: Defects in CYP11A1 are the cause of adrenal insufficiency congenital with 46,XY sex reversal (AICSR) [MIM:613743]. A rare disorder that can present as acute adrenal insufficiency in infancy or childhood. ACTH and plasma renin activity are elevated and adrenal steroids are inappropriately low or absent; the 46,XY patients have female external genitalia, sometimes with clitoromegaly. The phenotypic spectrum ranges from prematurity, complete underandrogenization, and severe early-onset adrenal failure to term birth with clitoromegaly and later-onset adrenal failure. Patients with congenital adrenal insufficiency do not manifest the massive adrenal enlargement typical of congenital lipoid adrenal hyperplasia.
SIMILARITY: Belongs to the cytochrome P450 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CYP11A1
Diseases sorted by gene-association score: adrenal insufficiency, congenital, with 46xy sex reversal, partial or complete* (1668), inherited isolated adrenal insufficiency due to partial cyp11a1 deficiency* (350), lipoid adrenal hyperplasia (23), acute adrenal insufficiency (19), polycystic ovary syndrome (16), addison's disease (12), congenital adrenal hyperplasia (12), adrenal adenoma (11), adrenal cortical carcinoma (9), choriocarcinoma (9), leydig cell tumor (9), autoimmune polyendocrine syndrome type 1 (8), adrenal cortical adenoma (8), testicular leydig cell tumor (7), cholesterol ester storage disease (6), adrenal cortical hypofunction (6), adrenal carcinoma (6), steroid inherited metabolic disorder (6), wolman disease (6), premature ovarian failure 1 (5), chromosome 15q24 deletion syndrome (5), juvenile nasopharyngeal angiofibroma (4), 46 xy gonadal dysgenesis (4), image syndrome (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 428.67 RPKM in Adrenal Gland
Total median expression: 498.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.8061-0.325 Picture PostScript Text
3' UTR -77.80210-0.370 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001128 - Cyt_P450
IPR017972 - Cyt_P450_CS
IPR002401 - Cyt_P450_E_grp-I

Pfam Domains:
PF00067 - Cytochrome P450

SCOP Domains:
48264 - Cytochrome P450
52374 - Nucleotidylyl transferase

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3N9Y - X-ray MuPIT 3N9Z - X-ray MuPIT 3NA0 - X-ray MuPIT 3NA1 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P05108
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004497 monooxygenase activity
GO:0005506 iron ion binding
GO:0005515 protein binding
GO:0008386 cholesterol monooxygenase (side-chain-cleaving) activity
GO:0016491 oxidoreductase activity
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 heme binding
GO:0046872 metal ion binding

Biological Process:
GO:0006629 lipid metabolic process
GO:0006694 steroid biosynthetic process
GO:0006700 C21-steroid hormone biosynthetic process
GO:0008202 steroid metabolic process
GO:0008203 cholesterol metabolic process
GO:0008207 C21-steroid hormone metabolic process
GO:0016125 sterol metabolic process
GO:0042359 vitamin D metabolic process
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005759 mitochondrial matrix
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  AK292301 - Homo sapiens cDNA FLJ78412 complete cds.
AK056794 - Homo sapiens cDNA FLJ32232 fis, clone PLACE6004578, highly similar to Cytochrome P450 11A1, mitochondrial precursor (EC 1.14.15.6).
AK225715 - Homo sapiens mRNA for cytochrome P450, subfamily XIA precursor variant, clone: TST00206.
AK292300 - Homo sapiens cDNA FLJ76435 complete cds, highly similar to Homo sapiens cytochrome P450, family 11, subfamily A, polypeptide 1 (CYP11A1), mRNA.
AK300178 - Homo sapiens cDNA FLJ53744 complete cds, highly similar to Cytochrome P450 11A1, mitochondrial precursor (EC 1.14.15.6).
M14565 - Human cholesterol side-chain cleavage enzyme P450scc mRNA, complete cds.
BC032329 - Homo sapiens cytochrome P450, family 11, subfamily A, polypeptide 1, mRNA (cDNA clone MGC:40357 IMAGE:5165263), complete cds.
AK293211 - Homo sapiens cDNA FLJ51788 complete cds, highly similar to Cytochrome P450 11A1, mitochondrial precursor (EC 1.14.15.6).
JD072439 - Sequence 53463 from Patent EP1572962.
JD167118 - Sequence 148142 from Patent EP1572962.
JD298559 - Sequence 279583 from Patent EP1572962.
JD251939 - Sequence 232963 from Patent EP1572962.
JD079893 - Sequence 60917 from Patent EP1572962.
M28253 - Human cholesterol side-chain cleavage (SCC) enzyme (P450scc) mRNA, 3' end.
JD073769 - Sequence 54793 from Patent EP1572962.
JD319798 - Sequence 300822 from Patent EP1572962.
DQ891578 - Synthetic construct clone IMAGE:100004208; FLH178308.01X; RZPDo839B09128D cytochrome P450, family 11, subfamily A, polypeptide 1 (CYP11A1) gene, encodes complete protein.
DQ894771 - Synthetic construct Homo sapiens clone IMAGE:100009231; FLH178304.01L; RZPDo839B09127D cytochrome P450, family 11, subfamily A, polypeptide 1 (CYP11A1) gene, encodes complete protein.
KJ896683 - Synthetic construct Homo sapiens clone ccsbBroadEn_06077 CYP11A1 gene, encodes complete protein.
KU178011 - Homo sapiens cytochrome P450 family 11 subfamily A polypeptide 1 isoform 1 (CYP11A1) mRNA, partial cds.
KU178012 - Homo sapiens cytochrome P450 family 11 subfamily A polypeptide 1 isoform 2 (CYP11A1) mRNA, partial cds, alternatively spliced.
KU178013 - Homo sapiens cytochrome P450 family 11 subfamily A polypeptide 1 isoform 3 (CYP11A1) mRNA, partial cds, alternatively spliced.
KU178014 - Homo sapiens cytochrome P450 family 11 subfamily A polypeptide 1 isoform 4 (CYP11A1) mRNA, complete cds, alternatively spliced.
AB528448 - Synthetic construct DNA, clone: pF1KB0481, Homo sapiens CYP11A1 gene for cytochrome P450, family 11, subfamily A, polypeptide 1, without stop codon, in Flexi system.
AY603498 - Homo sapiens CYP11A1-like mRNA, partial sequence.
AK293204 - Homo sapiens cDNA FLJ59836 complete cds, highly similar to Cytochrome P450 11A1, mitochondrial precursor(EC 1.14.15.6).
CU689338 - Synthetic construct Homo sapiens gateway clone IMAGE:100019769 5' read CYP11A1 mRNA.
AK310362 - Homo sapiens cDNA, FLJ17404.
JD022942 - Sequence 3966 from Patent EP1572962.
JD020556 - Sequence 1580 from Patent EP1572962.
JD023037 - Sequence 4061 from Patent EP1572962.
JD023038 - Sequence 4062 from Patent EP1572962.
JD023039 - Sequence 4063 from Patent EP1572962.
JD031068 - Sequence 12092 from Patent EP1572962.
JD031069 - Sequence 12093 from Patent EP1572962.
JD438095 - Sequence 419119 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-7305 - superpathway of steroid hormone biosynthesis
PWY66-377 - pregnenolone biosynthesis

Reactome (by CSHL, EBI, and GO)

Protein P05108 (Reactome details) participates in the following event(s):

R-HSA-193101 CYP11A1 cleaves 20a,22b-DHCHOL
R-HSA-193054 Oxidation of cholesterol to 22beta-hydroxycholesterol
R-HSA-193065 Oxidation of 22beta-hydroxycholesterol to 20alpha,22beta-hydroxycholesterol
R-HSA-196108 Pregnenolone biosynthesis
R-HSA-211976 Endogenous sterols
R-HSA-196071 Metabolism of steroid hormones
R-HSA-209943 Steroid hormones
R-HSA-211897 Cytochrome P450 - arranged by substrate type
R-HSA-5579026 Defective CYP11A1 causes Adrenal insufficiency, congenital, with 46,XY sex reversal (AICSR)
R-HSA-8957322 Metabolism of steroids
R-HSA-211945 Phase I - Functionalization of compounds
R-HSA-5579029 Metabolic disorders of biological oxidation enzymes
R-HSA-556833 Metabolism of lipids
R-HSA-211859 Biological oxidations
R-HSA-5668914 Diseases of metabolism
R-HSA-1430728 Metabolism
R-HSA-1643685 Disease

-  Other Names for This Gene
  Alternate Gene Symbols: A8K8D5, B3KPU8, CP11A_HUMAN, CYP11A, CYP11A1 , ENST00000268053.1, ENST00000268053.10, ENST00000268053.2, ENST00000268053.3, ENST00000268053.4, ENST00000268053.5, ENST00000268053.6, ENST00000268053.7, ENST00000268053.8, ENST00000268053.9, G3XAD7, NM_000781, P05108, Q15081, Q16805, Q8N1A7, uc317imk.1, uc317imk.2
UCSC ID: ENST00000268053.11_7
RefSeq Accession: NM_000781.3
Protein: P05108 (aka CP11A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.