Human Gene CEP135 (ENST00000257287.5_4) from GENCODE V47lift37
  Description: centrosomal protein 135 (from RefSeq NM_025009.5)
Gencode Transcript: ENST00000257287.5_4
Gencode Gene: ENSG00000174799.12_8
Transcript (Including UTRs)
   Position: hg19 chr4:56,815,111-56,899,527 Size: 84,417 Total Exon Count: 26 Strand: +
Coding Region
   Position: hg19 chr4:56,818,297-56,890,769 Size: 72,473 Coding Exon Count: 24 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:56,815,111-56,899,527)mRNA (may differ from genome)Protein (1140 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CP135_HUMAN
DESCRIPTION: RecName: Full=Centrosomal protein of 135 kDa; Short=Cep135; AltName: Full=Centrosomal protein 4;
FUNCTION: Centrosomal protein involved in centriole biogenesis. Acts as a scaffolding protein during early centriole biogenesis. Also required for centriole-centriole cohesion during interphase by acting as a platform protein for CEP250 at the centriole.
SUBUNIT: Interacts with DCTN2 (By similarity). Interacts with CEP250.
INTERACTION: Q9P2S5:WRAP73; NbExp=2; IntAct=EBI-1046993, EBI-1054904;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome, centriole. Note=During centriole biogenesis, it is concentrated within the proximal lumen of both parental centrioles and procentrioles.
DISEASE: Defects in CEP135 are the cause of microcephaly, primary, type 8 (MCPH8) [MIM:614673]. MCPH8 is a disease defined as a head circumference more than 3 standard deviations below the age- related mean. Brain weight is markedly reduced and the cerebral cortex is disproportionately small. Despite this marked reduction in size, the gyral pattern is relatively well preserved, with no major abnormality in cortical architecture. Affected individuals are mentally retarded. Primary microcephaly is further defined by the absence of other syndromic features or significant neurological deficits due to degenerative brain disorder.
SIMILARITY: Belongs to the CEP135/TSGA10 family.
SEQUENCE CAUTION: Sequence=AAH12003.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence; Sequence=BAA31610.2; Type=Miscellaneous discrepancy; Note=Intron retention;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CEP135
Diseases sorted by gene-association score: microcephaly 8, primary, autosomal recessive* (1019), primary microcephaly (17), autosomal recessive primary microcephaly (8), microcephaly (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.55 RPKM in Testis
Total median expression: 71.00 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -55.50160-0.347 Picture PostScript Text
3' UTR -449.502013-0.223 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026732 - Cep135

SCOP Domains:
57997 - Tropomyosin
111474 - Coronavirus S2 glycoprotein

ModBase Predicted Comparative 3D Structure on Q66GS9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008022 protein C-terminus binding

Biological Process:
GO:0000086 G2/M transition of mitotic cell cycle
GO:0007099 centriole replication
GO:0010389 regulation of G2/M transition of mitotic cell cycle
GO:0010457 centriole-centriole cohesion
GO:0097711 ciliary basal body docking
GO:1902857 positive regulation of non-motile cilium assembly

Cellular Component:
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005814 centriole
GO:0005829 cytosol
GO:0005856 cytoskeleton


-  Descriptions from all associated GenBank mRNAs
  BC136535 - Homo sapiens centrosomal protein 135kDa, mRNA (cDNA clone MGC:168148 IMAGE:9020525), complete cds.
BC136536 - Homo sapiens centrosomal protein 135kDa, mRNA (cDNA clone MGC:168149 IMAGE:9020526), complete cds.
KJ892828 - Synthetic construct Homo sapiens clone ccsbBroadEn_02222 CEP135 gene, encodes complete protein.
AB014535 - Homo sapiens KIAA0635 mRNA for KIAA0635 protein, partial cds.
AK023683 - Homo sapiens cDNA FLJ13621 fis, clone PLACE1010954.
JD468988 - Sequence 450012 from Patent EP1572962.
JD197376 - Sequence 178400 from Patent EP1572962.
JD354466 - Sequence 335490 from Patent EP1572962.
JD538186 - Sequence 519210 from Patent EP1572962.
JD462795 - Sequence 443819 from Patent EP1572962.
AK309554 - Homo sapiens cDNA, FLJ99595.
BC012003 - Homo sapiens centrosomal protein 135kDa, mRNA (cDNA clone IMAGE:4509740), partial cds.
JD369854 - Sequence 350878 from Patent EP1572962.
JD361536 - Sequence 342560 from Patent EP1572962.
BC070499 - Homo sapiens cDNA clone IMAGE:6199415, partial cds.
JD314234 - Sequence 295258 from Patent EP1572962.
JD284530 - Sequence 265554 from Patent EP1572962.
JD234903 - Sequence 215927 from Patent EP1572962.
JD313122 - Sequence 294146 from Patent EP1572962.
JD314445 - Sequence 295469 from Patent EP1572962.
JD046445 - Sequence 27469 from Patent EP1572962.
JD345937 - Sequence 326961 from Patent EP1572962.
JD226035 - Sequence 207059 from Patent EP1572962.
JD089079 - Sequence 70103 from Patent EP1572962.
JD544479 - Sequence 525503 from Patent EP1572962.
JD185868 - Sequence 166892 from Patent EP1572962.
JD185869 - Sequence 166893 from Patent EP1572962.
JD101953 - Sequence 82977 from Patent EP1572962.
JD481407 - Sequence 462431 from Patent EP1572962.
JD076239 - Sequence 57263 from Patent EP1572962.
JD564343 - Sequence 545367 from Patent EP1572962.
JD558273 - Sequence 539297 from Patent EP1572962.
JD105392 - Sequence 86416 from Patent EP1572962.
JD421010 - Sequence 402034 from Patent EP1572962.
JD211360 - Sequence 192384 from Patent EP1572962.
JD408307 - Sequence 389331 from Patent EP1572962.
JD482995 - Sequence 464019 from Patent EP1572962.
JD238291 - Sequence 219315 from Patent EP1572962.
JD243157 - Sequence 224181 from Patent EP1572962.
JD430346 - Sequence 411370 from Patent EP1572962.
JD557469 - Sequence 538493 from Patent EP1572962.
JD529475 - Sequence 510499 from Patent EP1572962.
JD169772 - Sequence 150796 from Patent EP1572962.
JD306413 - Sequence 287437 from Patent EP1572962.
JD055277 - Sequence 36301 from Patent EP1572962.
JD534858 - Sequence 515882 from Patent EP1572962.
JD517949 - Sequence 498973 from Patent EP1572962.
JD219996 - Sequence 201020 from Patent EP1572962.
JD318851 - Sequence 299875 from Patent EP1572962.
JD046754 - Sequence 27778 from Patent EP1572962.
JD257578 - Sequence 238602 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q66GS9 (Reactome details) participates in the following event(s):

R-HSA-380272 Plk1-mediated phosphorylation of Nlp
R-HSA-380283 Recruitment of additional gamma tubulin/ gamma TuRC to the centrosome
R-HSA-380294 Loss of C-Nap-1 from centrosomes
R-HSA-380311 Recruitment of Plk1 to centrosomes
R-HSA-380455 Recruitment of CDK11p58 to the centrosomes
R-HSA-380303 Dissociation of Phospho-Nlp from the centrosome
R-HSA-5626220 C2CD3 binds the mother centriole
R-HSA-380508 Translocation of NuMA to the centrosomes
R-HSA-2574845 AJUBA binds centrosome-associated AURKA
R-HSA-8853405 TPX2 binds AURKA at centrosomes
R-HSA-3000319 BORA binds PLK1 and AURKA
R-HSA-2574840 AJUBA facilitates AURKA autophosphorylation
R-HSA-3000310 AURKA phosphorylates PLK1
R-HSA-5626223 C2CD3 and OFD1 recruit 5 distal appendage proteins to the centriole
R-HSA-5626681 Recruitment of transition zone proteins
R-HSA-5626227 CP110 and CEP97 dissociate from the centriole
R-HSA-380316 Association of NuMA with microtubules
R-HSA-8853419 TPX2 promotes AURKA autophosphorylation
R-HSA-5626228 The distal appendage proteins recruit TTBK2
R-HSA-5638009 CEP164 recruits RAB3IP-carrying Golgi-derived vesicles to the basal body
R-HSA-5626699 MARK4 binds ODF2 in the centriole
R-HSA-5617816 RAB3IP stimulates nucleotide exchange on RAB8A
R-HSA-380259 Loss of Nlp from mitotic centrosomes
R-HSA-380270 Recruitment of mitotic centrosome proteins and complexes
R-HSA-380284 Loss of proteins required for interphase microtubule organization from the centrosome
R-HSA-5620912 Anchoring of the basal body to the plasma membrane
R-HSA-380320 Recruitment of NuMA to mitotic centrosomes
R-HSA-2565942 Regulation of PLK1 Activity at G2/M Transition
R-HSA-8854518 AURKA Activation by TPX2
R-HSA-380287 Centrosome maturation
R-HSA-5617833 Cilium Assembly
R-HSA-68877 Mitotic Prometaphase
R-HSA-69275 G2/M Transition
R-HSA-1852241 Organelle biogenesis and maintenance
R-HSA-68886 M Phase
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: B2RMY0, CEP135 , CEP4, CP135_HUMAN, ENST00000257287.1, ENST00000257287.2, ENST00000257287.3, ENST00000257287.4, KIAA0635, NM_025009, O75130, Q58F25, Q66GS9, Q9H8H7, uc317fxv.1, uc317fxv.2
UCSC ID: ENST00000257287.5_4
RefSeq Accession: NM_025009.5
Protein: Q66GS9 (aka CP135_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.