Human Gene CENPJ (ENST00000381884.9_7) from GENCODE V47lift37
  Description: centromere protein J, transcript variant 2 (from RefSeq NR_047594.2)
Gencode Transcript: ENST00000381884.9_7
Gencode Gene: ENSG00000151849.16_10
Transcript (Including UTRs)
   Position: hg19 chr13:25,456,417-25,496,999 Size: 40,583 Total Exon Count: 17 Strand: -
Coding Region
   Position: hg19 chr13:25,457,315-25,487,163 Size: 29,849 Coding Exon Count: 16 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:25,456,417-25,496,999)mRNA (may differ from genome)Protein (1338 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CENPJ_HUMAN
DESCRIPTION: RecName: Full=Centromere protein J; Short=CENP-J; AltName: Full=Centrosomal P4.1-associated protein; AltName: Full=LAG-3-associated protein; AltName: Full=LYST-interacting protein 1;
FUNCTION: Plays an important role in cell division and centrosome function by participating in centriole duplication. Inhibits microtubule nucleation from the centrosome.
SUBUNIT: Part of a ternary complex composed of SASS6, CENPJ and CEP350. Associated with the gamma-tubulin complex. Interacts with the head domain of EPB41. Interacts with LYST. Interacts with CEP152 (via C-terminus).
INTERACTION: Q96RK0:CIC; NbExp=2; IntAct=EBI-946194, EBI-945857; Q5VTD9:GFI1B; NbExp=2; IntAct=EBI-946194, EBI-946212;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, centrosome. Cytoplasm, cytoskeleton, centrosome, centriole. Note=Localized within the center of microtubule asters. During centriole biogenesis, it is concentrated within the proximal lumen of both parental centrioles and procentrioles.
PTM: Phosphorylation at Ser-589 and Ser-595 by PLK2 is required for procentriole formation and centriole elongation. Phosphorylation by PLK2 oscillates during the cell cycle: it increases at G1/S transition and decreases during the exit from mitosis. Phosphorylation at Ser-595 is also mediated by PLK4 but is not a critical step in PLK4 function in procentriole assembly.
DISEASE: Defects in CENPJ are the cause of microcephaly primary type 6 (MCPH6) [MIM:608393]. A disorder defined as a head circumference more than 3 standard deviations below the age- related mean. Brain weight is markedly reduced and the cerebral cortex is disproportionately small. Despite this marked reduction in size, the gyral pattern is relatively well preserved, with no major abnormality in cortical architecture. Primary microcephaly is further defined by the absence of other syndromic features or significant neurological deficits.
DISEASE: Defects in CENPJ are the cause of Seckel syndrome type 4 (SCKL4) [MIM:613676]. SCKL4 is a rare autosomal recessive disorder characterized by proportionate dwarfism of prenatal onset associated with low birth weight, growth retardation, severe microcephaly with a bird-headed like appearance, and mental retardation.
SIMILARITY: Belongs to the TCP10 family.
SEQUENCE CAUTION: Sequence=AAH24209.3; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CENPJ
Diseases sorted by gene-association score: microcephaly 6, primary, autosomal recessive* (1329), seckel syndrome 4* (1069), seckel syndrome 5* (283), seckel syndrome* (192), primary microcephaly (20), microcephaly (18), microcephalic osteodysplastic primordial dwarfism, type ii (7), autosomal recessive primary microcephaly (6), congenital nervous system abnormality (4), physical disorder (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.58 RPKM in Testis
Total median expression: 173.96 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -52.40167-0.314 Picture PostScript Text
3' UTR -203.70898-0.227 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009852 - Tcp10_C_dom
IPR026581 - TCP10_fam

Pfam Domains:
PF03990 - G5-linked-Ubiquitin-like domain
PF07202 - T-complex protein 10 C-terminus

SCOP Domains:
82185 - Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain

ModBase Predicted Comparative 3D Structure on Q9HC77
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0015631 tubulin binding
GO:0019901 protein kinase binding
GO:0019904 protein domain specific binding
GO:0042802 identical protein binding

Biological Process:
GO:0000086 G2/M transition of mitotic cell cycle
GO:0007020 microtubule nucleation
GO:0007099 centriole replication
GO:0007224 smoothened signaling pathway
GO:0010389 regulation of G2/M transition of mitotic cell cycle
GO:0044458 motile cilium assembly
GO:0046599 regulation of centriole replication
GO:0046785 microtubule polymerization
GO:0051298 centrosome duplication
GO:0051301 cell division
GO:0061511 centriole elongation
GO:0097711 ciliary basal body docking
GO:0098534 centriole assembly
GO:1902857 positive regulation of non-motile cilium assembly
GO:1905515 non-motile cilium assembly

Cellular Component:
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005814 centriole
GO:0005815 microtubule organizing center
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005886 plasma membrane
GO:0008275 gamma-tubulin small complex
GO:0036064 ciliary basal body


-  Descriptions from all associated GenBank mRNAs
  AJ303006 - Homo sapiens partial mRNA for LAG-3-associated protein (LAP gene).
AX751424 - Sequence 8 from Patent WO03035682.
JD304296 - Sequence 285320 from Patent EP1572962.
AF139625 - Homo sapiens centrosomal P4.1-associated protein (CPAP) mRNA, complete cds.
AK292406 - Homo sapiens cDNA FLJ78752 complete cds, highly similar to Homo sapiens centromere protein J (CENPJ), mRNA.
AK123551 - Homo sapiens cDNA FLJ41557 fis, clone COLON2008105, highly similar to Centromere protein J.
AF141337 - Homo sapiens LYST-interacting protein LIP1 mRNA, partial cds.
BC024209 - Homo sapiens centromere protein J, mRNA (cDNA clone IMAGE:3028074), complete cds.
AL833182 - Homo sapiens mRNA; cDNA DKFZp667E025 (from clone DKFZp667E025).
BC113662 - Homo sapiens centromere protein J, mRNA (cDNA clone MGC:142222 IMAGE:8322714), complete cds.
BC113664 - Homo sapiens centromere protein J, mRNA (cDNA clone MGC:142224 IMAGE:8322716), complete cds.
BC143757 - Homo sapiens cDNA clone IMAGE:9052271.
BC143758 - Homo sapiens cDNA clone IMAGE:9052272.
BC113110 - Homo sapiens centromere protein J, mRNA (cDNA clone MGC:131581 IMAGE:7961385), complete cds.
BC113111 - Homo sapiens centromere protein J, mRNA (cDNA clone MGC:131582 IMAGE:7961390), complete cds.
HQ258541 - Synthetic construct Homo sapiens clone IMAGE:100072970 centromere protein J (CENPJ) gene, encodes complete protein.
BC062675 - Homo sapiens cDNA clone IMAGE:4614966, partial cds.
AF141343 - Homo sapiens LYST-interacting protein LIP7 mRNA, partial cds.
AF217509 - Homo sapiens uncharacterized bone marrow protein BM032 mRNA, complete cds.
BC092467 - Homo sapiens centromere protein J, mRNA (cDNA clone IMAGE:30520459), partial cds.
JD421268 - Sequence 402292 from Patent EP1572962.
JD199349 - Sequence 180373 from Patent EP1572962.
JD368880 - Sequence 349904 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9HC77 (Reactome details) participates in the following event(s):

R-HSA-6801666 PLK2 phosphorylates CENPJ
R-HSA-380272 Plk1-mediated phosphorylation of Nlp
R-HSA-380283 Recruitment of additional gamma tubulin/ gamma TuRC to the centrosome
R-HSA-380294 Loss of C-Nap-1 from centrosomes
R-HSA-380311 Recruitment of Plk1 to centrosomes
R-HSA-380455 Recruitment of CDK11p58 to the centrosomes
R-HSA-380303 Dissociation of Phospho-Nlp from the centrosome
R-HSA-5626220 C2CD3 binds the mother centriole
R-HSA-380508 Translocation of NuMA to the centrosomes
R-HSA-2574845 AJUBA binds centrosome-associated AURKA
R-HSA-8853405 TPX2 binds AURKA at centrosomes
R-HSA-3000319 BORA binds PLK1 and AURKA
R-HSA-2574840 AJUBA facilitates AURKA autophosphorylation
R-HSA-3000310 AURKA phosphorylates PLK1
R-HSA-5626223 C2CD3 and OFD1 recruit 5 distal appendage proteins to the centriole
R-HSA-5626681 Recruitment of transition zone proteins
R-HSA-5626227 CP110 and CEP97 dissociate from the centriole
R-HSA-380316 Association of NuMA with microtubules
R-HSA-8853419 TPX2 promotes AURKA autophosphorylation
R-HSA-5626228 The distal appendage proteins recruit TTBK2
R-HSA-5638009 CEP164 recruits RAB3IP-carrying Golgi-derived vesicles to the basal body
R-HSA-5626699 MARK4 binds ODF2 in the centriole
R-HSA-5617816 RAB3IP stimulates nucleotide exchange on RAB8A
R-HSA-6804115 TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain
R-HSA-380259 Loss of Nlp from mitotic centrosomes
R-HSA-380270 Recruitment of mitotic centrosome proteins and complexes
R-HSA-380284 Loss of proteins required for interphase microtubule organization from the centrosome
R-HSA-5620912 Anchoring of the basal body to the plasma membrane
R-HSA-6791312 TP53 Regulates Transcription of Cell Cycle Genes
R-HSA-380320 Recruitment of NuMA to mitotic centrosomes
R-HSA-2565942 Regulation of PLK1 Activity at G2/M Transition
R-HSA-8854518 AURKA Activation by TPX2
R-HSA-380287 Centrosome maturation
R-HSA-5617833 Cilium Assembly
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-68877 Mitotic Prometaphase
R-HSA-69275 G2/M Transition
R-HSA-1852241 Organelle biogenesis and maintenance
R-HSA-212436 Generic Transcription Pathway
R-HSA-68886 M Phase
R-HSA-453274 Mitotic G2-G2/M phases
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-74160 Gene expression (Transcription)
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: CENPJ_HUMAN, CPAP, ENST00000381884.1, ENST00000381884.2, ENST00000381884.3, ENST00000381884.4, ENST00000381884.5, ENST00000381884.6, ENST00000381884.7, ENST00000381884.8, LAP, LIP1, NR_047594, Q2KHM6, Q5JPD5, Q5T6R5, Q96KS5, Q9C067, Q9HC77, uc318qnh.1, uc318qnh.2
UCSC ID: ENST00000381884.9_7
RefSeq Accession: NM_018451.5
Protein: Q9HC77 (aka CENPJ_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
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