Human Gene BSND (ENST00000651561.1_4) from GENCODE V47lift37
  Description: barttin CLCNK type accessory subunit beta (from RefSeq NM_057176.3)
Gencode Transcript: ENST00000651561.1_4
Gencode Gene: ENSG00000162399.9_10
Transcript (Including UTRs)
   Position: hg19 chr1:55,464,606-55,482,845 Size: 18,240 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr1:55,464,860-55,474,301 Size: 9,442 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:55,464,606-55,482,845)mRNA (may differ from genome)Protein (320 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: BSND_HUMAN
DESCRIPTION: RecName: Full=Barttin;
FUNCTION: Functions as a beta-subunit for CLCNKA and CLCNKB chloride channels. In the kidney CLCNK/BSND heteromers mediate chloride reabsorption by facilitating its basolateral efflux. In the stria, CLCNK/BSND channels drive potassium secretion by recycling chloride for the basolateral SLC12A2 cotransporter.
SUBUNIT: Interacts with CLCNK channels. Forms heteromers with CLCNKA in the thin ascending limb of Henle and with CLCNKB in the thick ascending limb and more distal segments (By similarity).
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (By similarity). Cytoplasm (By similarity). Note=A significant amount also observed intracellularly. Staining in membranes of the renal tubule and of potassium-secreting epithelia of the inner ear is basolateral (By similarity).
TISSUE SPECIFICITY: Expressed primarily in kidney. Expressed in specific nephron segments and in the stria vascularis of the inner ear.
DISEASE: Defects in BSND are the cause of Bartter syndrome type 4A (BS4A) [MIM:602522]; also known as infantile Bartter syndrome with sensorineural deafness. BS refers to a group of autosomal recessive disorders characterized by impaired salt reabsorption in the thick ascending loop of Henle with pronounced salt wasting, hypokalemic metabolic alkalosis, and varying degrees of hypercalciuria. BS4A is associated with sensorineural deafness.
SEQUENCE CAUTION: Sequence=BC069510; Type=Frameshift; Positions=Several;
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/BSND";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BSND
Diseases sorted by gene-association score: bartter syndrome, type 4a* (1667), bartter syndrome type 4* (400), autosomal recessive non-syndromic sensorineural deafness type dfnb* (52), gitelman syndrome (15), bartter disease (14), hypokalemia (11), antenatal bartter syndrome (9), renal tubular transport disease (6), bartter syndrome, type 3 (5), nonsyndromic deafness (2), inner ear disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -114.80254-0.452 Picture PostScript Text
3' UTR -3297.008544-0.386 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF15462 - Bartter syndrome, infantile, with sensorineural deafness (Barttin)

ModBase Predicted Comparative 3D Structure on Q8WZ55
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005247 voltage-gated chloride channel activity
GO:0005254 chloride channel activity
GO:0017081 chloride channel regulator activity

Biological Process:
GO:0006821 chloride transport
GO:0034220 ion transmembrane transport
GO:1902476 chloride transmembrane transport

Cellular Component:
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0016323 basolateral plasma membrane
GO:0032991 macromolecular complex


-  Descriptions from all associated GenBank mRNAs
  AK129999 - Homo sapiens cDNA FLJ26489 fis, clone KDN05855.
AY034632 - Homo sapiens barttin (BSND) mRNA, complete cds.
BC103898 - Homo sapiens Bartter syndrome, infantile, with sensorineural deafness (Barttin), mRNA (cDNA clone MGC:119283 IMAGE:40005137), complete cds.
BC103899 - Homo sapiens Bartter syndrome, infantile, with sensorineural deafness (Barttin), mRNA (cDNA clone MGC:119284 IMAGE:40005138), complete cds.
BC103900 - Homo sapiens Bartter syndrome, infantile, with sensorineural deafness (Barttin), mRNA (cDNA clone MGC:119285 IMAGE:40005139), complete cds.
JD343425 - Sequence 324449 from Patent EP1572962.
BC069510 - Homo sapiens cDNA clone IMAGE:7262367, containing frame-shift errors.
JD392104 - Sequence 373128 from Patent EP1572962.
JD396013 - Sequence 377037 from Patent EP1572962.
JD485904 - Sequence 466928 from Patent EP1572962.
JD209534 - Sequence 190558 from Patent EP1572962.
KJ892435 - Synthetic construct Homo sapiens clone ccsbBroadEn_01829 BSND gene, encodes complete protein.
KR711767 - Synthetic construct Homo sapiens clone CCSBHm_00030810 BSND (BSND) mRNA, encodes complete protein.
KR711768 - Synthetic construct Homo sapiens clone CCSBHm_00030814 BSND (BSND) mRNA, encodes complete protein.
KR711769 - Synthetic construct Homo sapiens clone CCSBHm_00030815 BSND (BSND) mRNA, encodes complete protein.
KR711770 - Synthetic construct Homo sapiens clone CCSBHm_00030817 BSND (BSND) mRNA, encodes complete protein.
KJ905957 - Synthetic construct Homo sapiens clone ccsbBroadEn_15627 BSND gene, encodes complete protein.
JD133797 - Sequence 114821 from Patent EP1572962.
JD264002 - Sequence 245026 from Patent EP1572962.
JD098619 - Sequence 79643 from Patent EP1572962.
JD314032 - Sequence 295056 from Patent EP1572962.
JD264545 - Sequence 245569 from Patent EP1572962.
JD476728 - Sequence 457752 from Patent EP1572962.
JD560693 - Sequence 541717 from Patent EP1572962.
JD476729 - Sequence 457753 from Patent EP1572962.
JD379672 - Sequence 360696 from Patent EP1572962.
JD311796 - Sequence 292820 from Patent EP1572962.
JD272790 - Sequence 253814 from Patent EP1572962.
JD356716 - Sequence 337740 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8WZ55 (Reactome details) participates in the following event(s):

R-HSA-2744228 CLCN1/2/KA/KB transport cytosolic Cl- to extracellular region
R-HSA-2672351 Stimuli-sensing channels
R-HSA-983712 Ion channel transport
R-HSA-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: BART, BSND_HUMAN, NM_057176, Q6NT28, Q8WZ55, uc328tcw.1, uc328tcw.2
UCSC ID: ENST00000651561.1_4
RefSeq Accession: NM_057176.3
Protein: Q8WZ55 (aka BSND_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene BSND:
deafness-overview (Genetic Hearing Loss Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.