Human Gene BRD7 (ENST00000394688.8_10) from GENCODE V47lift37
  Description: bromodomain containing 7, transcript variant 2 (from RefSeq NM_013263.5)
Gencode Transcript: ENST00000394688.8_10
Gencode Gene: ENSG00000166164.17_15
Transcript (Including UTRs)
   Position: hg19 chr16:50,349,868-50,402,899 Size: 53,032 Total Exon Count: 17 Strand: -
Coding Region
   Position: hg19 chr16:50,353,122-50,402,685 Size: 49,564 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:50,349,868-50,402,899)mRNA (may differ from genome)Protein (651 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: BRD7_HUMAN
DESCRIPTION: RecName: Full=Bromodomain-containing protein 7; AltName: Full=75 kDa bromodomain protein; AltName: Full=Protein CELTIX-1;
FUNCTION: Acts both as coactivator and as corepressor. May play a role in chromatin remodeling. Activator of the Wnt signaling pathway in a DVL1-dependent manner by negatively regulating the GSK3B phosphotransferase activity. Induces dephosphorylation of GSK3B at 'Tyr-216'. Down-regulates TRIM24-mediated activation of transcriptional activation by AR (By similarity). Transcriptional corepressor that down-regulates the expression of target genes. Binds to target promoters, leading to increased histone H3 acetylation at 'Lys-9' (H3K9ac). Binds to the ESR1 promoter. Recruits BRCA1 and POU2F1 to the ESR1 promoter. Coactivator for TP53-mediated activation of transcription of a set of target genes. Required for TP53-mediated cell-cycle arrest in response to oncogene activation. Promotes acetylation of TP53 at 'Lys-382', and thereby promotes efficient recruitment of TP53 to target promoters. Inhibits cell cycle progression from G1 to S phase.
SUBUNIT: Interacts with TRIM24, PTPN13 and DVL1. Identified in a complex with SMARCA4/BRG1, SMARCC1/BAF155, SMARCE1/BAF57, DPF2/BAF45D and ARID2, subunits of the SWI/SNF-B (PBAF) chromatin remodeling complex (By similarity). Interacts with IRF2 and HNRPUL1. Interacts (via N-terminus) with TP53. Interacts (via C- terminus) with EP300. Interacts with BRCA1. Interacts (via bromo domain) with histone H3 (via N-terminus) acetylated at 'Lys-14' (H3K14ac). Has low affinity for histone H3 acetylated at 'Lys-9' (H3K9ac). Has the highest affinity for histone H3 that is acetylated both at 'Lys-9' (H3K9ac) and at 'Lys-14' (H3K14ac). Has very low affinity for non-acetylated histone H3. Interacts (via bromo domain) with histone H4 (via N-terminus) acetylated at 'Lys- 8' (H3K8ac) (in vitro).
INTERACTION: Q09472:EP300; NbExp=3; IntAct=EBI-711221, EBI-447295; P04637:TP53; NbExp=8; IntAct=EBI-711221, EBI-366083;
SUBCELLULAR LOCATION: Isoform 2: Nucleus.
SIMILARITY: Contains 1 bromo domain.
SEQUENCE CAUTION: Sequence=AAH01611.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAB55031.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAC11089.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BRD7
Diseases sorted by gene-association score: pharynx cancer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 30.81 RPKM in Testis
Total median expression: 902.97 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -143.70214-0.671 Picture PostScript Text
3' UTR -853.603254-0.262 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001487 - Bromodomain
IPR021900 - DUF3512

Pfam Domains:
PF00439 - Bromodomain
PF12024 - Domain of unknown function (DUF3512)

SCOP Domains:
47370 - Bromodomain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2I7K - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9NPI1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0002039 p53 binding
GO:0003713 transcription coactivator activity
GO:0003714 transcription corepressor activity
GO:0005515 protein binding
GO:0008134 transcription factor binding
GO:0042393 histone binding
GO:0044212 transcription regulatory region DNA binding
GO:0070577 lysine-acetylated histone binding

Biological Process:
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0007049 cell cycle
GO:0008285 negative regulation of cell proliferation
GO:0016055 Wnt signaling pathway
GO:0035066 positive regulation of histone acetylation
GO:0045892 negative regulation of transcription, DNA-templated
GO:0045893 positive regulation of transcription, DNA-templated
GO:1901796 regulation of signal transduction by p53 class mediator
GO:2000134 negative regulation of G1/S transition of mitotic cell cycle

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK074613 - Homo sapiens cDNA FLJ90132 fis, clone HEMBB1000542, highly similar to Mus musculus bromodomain-containing protein BP75 mRNA.
AF152604 - Homo sapiens bromodomain-containing protein (BRD7) mRNA, complete cds.
BC094706 - Homo sapiens bromodomain containing 7, mRNA (cDNA clone MGC:104375 IMAGE:30719813), complete cds.
AF213969 - Homo sapiens bromodomain protein CELTIX1 mRNA, complete cds.
JD566384 - Sequence 547408 from Patent EP1572962.
BC001611 - Homo sapiens, Similar to bromodomain-containing 7, clone IMAGE:3503011, mRNA, partial cds.
BC050728 - Homo sapiens bromodomain containing 7, mRNA (cDNA clone MGC:60365 IMAGE:6149862), complete cds.
AK027308 - Homo sapiens cDNA FLJ14402 fis, clone HEMBA1003783, moderately similar to Mus musculus bromodomain-containing protein BP75 mRNA.
AJ271881 - Homo sapiens mRNA for bromodomain containing protein (BP465 gene).
JD357319 - Sequence 338343 from Patent EP1572962.
AB527472 - Synthetic construct DNA, clone: pF1KB7890, Homo sapiens BRD7 gene for bromodomain containing 7, without stop codon, in Flexi system.
JD554194 - Sequence 535218 from Patent EP1572962.
DL490617 - Novel nucleic acids.
JD241183 - Sequence 222207 from Patent EP1572962.
JD039293 - Sequence 20317 from Patent EP1572962.
JD315629 - Sequence 296653 from Patent EP1572962.
JD315630 - Sequence 296654 from Patent EP1572962.
JD332858 - Sequence 313882 from Patent EP1572962.
JD445191 - Sequence 426215 from Patent EP1572962.
JD437765 - Sequence 418789 from Patent EP1572962.
JD177283 - Sequence 158307 from Patent EP1572962.
JD439341 - Sequence 420365 from Patent EP1572962.
JD382418 - Sequence 363442 from Patent EP1572962.
JD145051 - Sequence 126075 from Patent EP1572962.
JD038202 - Sequence 19226 from Patent EP1572962.
JD420736 - Sequence 401760 from Patent EP1572962.
JD522467 - Sequence 503491 from Patent EP1572962.
JD351483 - Sequence 332507 from Patent EP1572962.
JD384287 - Sequence 365311 from Patent EP1572962.
JD042417 - Sequence 23441 from Patent EP1572962.
JD050180 - Sequence 31204 from Patent EP1572962.
JD111895 - Sequence 92919 from Patent EP1572962.
JD141381 - Sequence 122405 from Patent EP1572962.
JD417090 - Sequence 398114 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9NPI1 (Reactome details) participates in the following event(s):

R-HSA-3222093 BRD7 binds TP53 and EP300
R-HSA-5628871 BRD7 promotes EP300-mediated acetylation of TP53
R-HSA-6805650 MTA2-NuRD complex deacetylates TP53
R-HSA-6804758 Regulation of TP53 Activity through Acetylation
R-HSA-5633007 Regulation of TP53 Activity
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: BP75, BRD7_HUMAN, CELTIX1, ENST00000394688.1, ENST00000394688.2, ENST00000394688.3, ENST00000394688.4, ENST00000394688.5, ENST00000394688.6, ENST00000394688.7, NM_013263, Q4VC09, Q8N2L9, Q96KA4, Q9BV48, Q9NPI1, Q9UH59, uc318wvg.1, uc318wvg.2
UCSC ID: ENST00000394688.8_10
RefSeq Accession: NM_013263.5
Protein: Q9NPI1 (aka BRD7_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.