Human Gene BRD4 (ENST00000679869.1_4) from GENCODE V47lift37
  Description: bromodomain containing 4, transcript variant 4 (from RefSeq NM_001379291.1)
Gencode Transcript: ENST00000679869.1_4
Gencode Gene: ENSG00000141867.19_17
Transcript (Including UTRs)
   Position: hg19 chr19:15,346,330-15,443,350 Size: 97,021 Total Exon Count: 20 Strand: -
Coding Region
   Position: hg19 chr19:15,349,188-15,383,910 Size: 34,723 Coding Exon Count: 19 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:15,346,330-15,443,350)mRNA (may differ from genome)Protein (1362 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: BRD4_HUMAN
DESCRIPTION: RecName: Full=Bromodomain-containing protein 4; AltName: Full=Protein HUNK1;
FUNCTION: Plays a role in a process governing chromosomal dynamics during mitosis (By similarity).
SUBUNIT: Associated with chromosomes during mitosis (By similarity). Interacts with bovine papillomavirus type 1 regulatory protein E2.
INTERACTION: P62993:GRB2; NbExp=2; IntAct=EBI-723869, EBI-401755; P16333:NCK1; NbExp=2; IntAct=EBI-723869, EBI-389883;
SUBCELLULAR LOCATION: Nucleus (By similarity).
TISSUE SPECIFICITY: Ubiquitously expressed.
DISEASE: Note=A chromosomal aberration involving BRD4 is found in a rare, aggressive, and lethal carcinoma arising in midline organs of young people. Translocation t(15;19)(q14;p13) with NUT which produces a BRD4-NUT fusion protein.
SIMILARITY: Contains 2 bromo domains.
SIMILARITY: Contains 1 NET domain.
SEQUENCE CAUTION: Sequence=AAC27978.1; Type=Erroneous initiation;
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/BRD4ID837ch19p13.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BRD4
Diseases sorted by gene-association score: nut midline carcinoma* (267), spinal canal intradural extramedullary neoplasm (16), diffuse lipomatosis (11), hyperglobulinemic purpura (9), functional colonic disease (6), colonic pseudo-obstruction (5), multiple cranial nerve palsy (5), blastic plasmacytoid dendritic cell (5), diabetes mellitus, ketosis-prone (5), extragonadal seminoma (5), primary hypomagnesemia (4), hypokalemic periodic paralysis, type 1 (4), glossopharyngeal nerve disease (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -159.60284-0.562 Picture PostScript Text
3' UTR -865.632858-0.303 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001487 - Bromodomain
IPR018359 - Bromodomain_CS

Pfam Domains:
PF00439 - Bromodomain
PF17035 - Bromodomain extra-terminal - transcription regulation
PF17105 - C-terminal domain of bromodomain protein 4

SCOP Domains:
47370 - Bromodomain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2I8N - NMR MuPIT 2LSP - NMR MuPIT 2NNU - X-ray MuPIT 2OSS - X-ray MuPIT 2OUO - X-ray MuPIT 2YEL - X-ray MuPIT 2YEM - X-ray MuPIT 3MXF - X-ray MuPIT 3P5O - X-ray MuPIT 3SVF - X-ray MuPIT 3SVG - X-ray MuPIT 3U5J - X-ray MuPIT 3U5K - X-ray MuPIT 3U5L - X-ray MuPIT 3UVW - X-ray MuPIT 3UVX - X-ray MuPIT 3UVY - X-ray MuPIT 3UW9 - X-ray MuPIT 3ZYU - X-ray MuPIT 4A9L - X-ray MuPIT 4E96 - X-ray MuPIT 4F3I - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on O60885
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000993 RNA polymerase II core binding
GO:0002039 p53 binding
GO:0003682 chromatin binding
GO:0005515 protein binding
GO:0070577 lysine-acetylated histone binding

Biological Process:
GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0006325 chromatin organization
GO:0006338 chromatin remodeling
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006974 cellular response to DNA damage stimulus
GO:0010971 positive regulation of G2/M transition of mitotic cell cycle
GO:0016032 viral process
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0050727 regulation of inflammatory response
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain
GO:2000002 negative regulation of DNA damage checkpoint

Cellular Component:
GO:0000794 condensed nuclear chromosome
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  LF210778 - JP 2014500723-A/18281: Polycomb-Associated Non-Coding RNAs.
LF341050 - JP 2014500723-A/148553: Polycomb-Associated Non-Coding RNAs.
BC008354 - Homo sapiens, Similar to bromodomain-containing 4, clone IMAGE:3542455, mRNA, partial cds.
LF341051 - JP 2014500723-A/148554: Polycomb-Associated Non-Coding RNAs.
AF386649 - Homo sapiens bromodomain-containing 4 (BRD4) mRNA, complete cds.
JD296683 - Sequence 277707 from Patent EP1572962.
JD245396 - Sequence 226420 from Patent EP1572962.
JD179394 - Sequence 160418 from Patent EP1572962.
JD399981 - Sequence 381005 from Patent EP1572962.
JD549083 - Sequence 530107 from Patent EP1572962.
JD565323 - Sequence 546347 from Patent EP1572962.
JD125039 - Sequence 106063 from Patent EP1572962.
JD471895 - Sequence 452919 from Patent EP1572962.
JD395518 - Sequence 376542 from Patent EP1572962.
JD257608 - Sequence 238632 from Patent EP1572962.
JD095902 - Sequence 76926 from Patent EP1572962.
JD129206 - Sequence 110230 from Patent EP1572962.
JD538243 - Sequence 519267 from Patent EP1572962.
JD380724 - Sequence 361748 from Patent EP1572962.
JD395229 - Sequence 376253 from Patent EP1572962.
JD408802 - Sequence 389826 from Patent EP1572962.
JD354234 - Sequence 335258 from Patent EP1572962.
JD459932 - Sequence 440956 from Patent EP1572962.
JD211559 - Sequence 192583 from Patent EP1572962.
JD243753 - Sequence 224777 from Patent EP1572962.
LF341052 - JP 2014500723-A/148555: Polycomb-Associated Non-Coding RNAs.
JD461072 - Sequence 442096 from Patent EP1572962.
LF341053 - JP 2014500723-A/148556: Polycomb-Associated Non-Coding RNAs.
LF341054 - JP 2014500723-A/148557: Polycomb-Associated Non-Coding RNAs.
LF341056 - JP 2014500723-A/148559: Polycomb-Associated Non-Coding RNAs.
LF341057 - JP 2014500723-A/148560: Polycomb-Associated Non-Coding RNAs.
LF341059 - JP 2014500723-A/148562: Polycomb-Associated Non-Coding RNAs.
LF341060 - JP 2014500723-A/148563: Polycomb-Associated Non-Coding RNAs.
Y12059 - H.sapiens HUNKI mRNA.
BC035266 - Homo sapiens bromodomain containing 4, mRNA (cDNA clone MGC:42948 IMAGE:4837491), complete cds.
KJ902344 - Synthetic construct Homo sapiens clone ccsbBroadEn_11738 BRD4 gene, encodes complete protein.
DQ580084 - Homo sapiens piRNA piR-48196, complete sequence.
LF341072 - JP 2014500723-A/148575: Polycomb-Associated Non-Coding RNAs.
LF341073 - JP 2014500723-A/148576: Polycomb-Associated Non-Coding RNAs.
LF341074 - JP 2014500723-A/148577: Polycomb-Associated Non-Coding RNAs.
AK307664 - Homo sapiens cDNA, FLJ97612.
LF341075 - JP 2014500723-A/148578: Polycomb-Associated Non-Coding RNAs.
BC000156 - Homo sapiens bromodomain containing 4, mRNA (cDNA clone IMAGE:2900081), partial cds.
BC038988 - Homo sapiens bromodomain containing 4, mRNA (cDNA clone IMAGE:5787152), partial cds.
BC091649 - Homo sapiens bromodomain containing 4, mRNA (cDNA clone IMAGE:6650796), partial cds.
BC067129 - Homo sapiens bromodomain containing 4, mRNA (cDNA clone IMAGE:6138785), partial cds.
BC047888 - Homo sapiens bromodomain containing 4, mRNA (cDNA clone IMAGE:5496307), partial cds.
BC030158 - Homo sapiens bromodomain containing 4, mRNA (cDNA clone IMAGE:5086929), partial cds.
KF974357 - Homo sapiens bromodomain-containing protein 4 variant (BRD4) mRNA, partial cds, alternatively spliced.
DQ593249 - Homo sapiens piRNA piR-33361, complete sequence.
LF341077 - JP 2014500723-A/148580: Polycomb-Associated Non-Coding RNAs.
LF341078 - JP 2014500723-A/148581: Polycomb-Associated Non-Coding RNAs.
LF341079 - JP 2014500723-A/148582: Polycomb-Associated Non-Coding RNAs.
LF341083 - JP 2014500723-A/148586: Polycomb-Associated Non-Coding RNAs.
LF341087 - JP 2014500723-A/148590: Polycomb-Associated Non-Coding RNAs.
AF252390 - Homo sapiens uncharacterized HUTR gene, mRNA sequence.
LF341088 - JP 2014500723-A/148591: Polycomb-Associated Non-Coding RNAs.
MA446355 - JP 2018138019-A/18281: Polycomb-Associated Non-Coding RNAs.
MA576627 - JP 2018138019-A/148553: Polycomb-Associated Non-Coding RNAs.
MA576628 - JP 2018138019-A/148554: Polycomb-Associated Non-Coding RNAs.
MA576629 - JP 2018138019-A/148555: Polycomb-Associated Non-Coding RNAs.
MA576630 - JP 2018138019-A/148556: Polycomb-Associated Non-Coding RNAs.
MA576631 - JP 2018138019-A/148557: Polycomb-Associated Non-Coding RNAs.
MA576633 - JP 2018138019-A/148559: Polycomb-Associated Non-Coding RNAs.
MA576634 - JP 2018138019-A/148560: Polycomb-Associated Non-Coding RNAs.
MA576636 - JP 2018138019-A/148562: Polycomb-Associated Non-Coding RNAs.
MA576637 - JP 2018138019-A/148563: Polycomb-Associated Non-Coding RNAs.
MA576649 - JP 2018138019-A/148575: Polycomb-Associated Non-Coding RNAs.
MA576650 - JP 2018138019-A/148576: Polycomb-Associated Non-Coding RNAs.
MA576651 - JP 2018138019-A/148577: Polycomb-Associated Non-Coding RNAs.
MA576652 - JP 2018138019-A/148578: Polycomb-Associated Non-Coding RNAs.
MA576654 - JP 2018138019-A/148580: Polycomb-Associated Non-Coding RNAs.
MA576655 - JP 2018138019-A/148581: Polycomb-Associated Non-Coding RNAs.
MA576656 - JP 2018138019-A/148582: Polycomb-Associated Non-Coding RNAs.
MA576660 - JP 2018138019-A/148586: Polycomb-Associated Non-Coding RNAs.
MA576664 - JP 2018138019-A/148590: Polycomb-Associated Non-Coding RNAs.
MA576665 - JP 2018138019-A/148591: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: BRD4_HUMAN, HUNK1, NM_001379291, O60433, O60885, Q4G0X8, Q86YS8, Q96PD3, uc330gde.1, uc330gde.2
UCSC ID: ENST00000679869.1_4
RefSeq Accession: NM_001379291.1
Protein: O60885 (aka BRD4_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene BRD4:
cdls (Cornelia de Lange Syndrome)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.