Human Gene BICD1 (ENST00000652176.1_10) from GENCODE V47lift37
  Description: BICD cargo adaptor 1, transcript variant 7 (from RefSeq NR_148725.2)
Gencode Transcript: ENST00000652176.1_10
Gencode Gene: ENSG00000151746.15_17
Transcript (Including UTRs)
   Position: hg19 chr12:32,259,781-32,536,567 Size: 276,787 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr12:32,260,266-32,530,561 Size: 270,296 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:32,259,781-32,536,567)mRNA (may differ from genome)Protein (975 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: BICD1_HUMAN
DESCRIPTION: RecName: Full=Protein bicaudal D homolog 1; Short=Bic-D 1;
FUNCTION: Regulates coat complex coatomer protein I (COPI)- independent Golgi-endoplasmic reticulum transport by recruiting the dynein-dynactin motor complex.
SUBUNIT: Interacts with RAB6A. Interacts (via C-terminus) with RAB6B (GTP-bound); the interaction is direct. Interacts with CLIP- 115 and KIFC2 (By similarity). Interacts with human cytomegalovirus/HHV-5 protein UL32.
INTERACTION: P40763:STAT3; NbExp=2; IntAct=EBI-1104509, EBI-518675;
SUBCELLULAR LOCATION: Golgi apparatus.
TISSUE SPECIFICITY: Expressed in the brain, heart and skeletal muscle.
PTM: Isoform 3 is phosphorylated on Ser-865 and Thr-866.
SIMILARITY: Belongs to the BicD family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: BICD1
Diseases sorted by gene-association score: lissencephaly 1 (12)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -194.40485-0.401 Picture PostScript Text
3' UTR -1399.406006-0.233 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018477 - Bicaudal-D_microtubule-assoc

Pfam Domains:
PF09730 - Microtubule-associated protein Bicaudal-D

SCOP Domains:
100939 - SPOC domain-like
58010 - Fibrinogen coiled-coil and central regions

ModBase Predicted Comparative 3D Structure on Q96G01
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
Gene SorterGene Sorter Gene SorterGene Sorter 
 RGD  WormBase 
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005200 structural constituent of cytoskeleton
GO:0005515 protein binding
GO:0008093 cytoskeletal adaptor activity
GO:0017137 Rab GTPase binding
GO:0019901 protein kinase binding
GO:0031871 proteinase activated receptor binding
GO:0034452 dynactin binding
GO:0045505 dynein intermediate chain binding
GO:0070840 dynein complex binding

Biological Process:
GO:0006396 RNA processing
GO:0008298 intracellular mRNA localization
GO:0009653 anatomical structure morphogenesis
GO:0016032 viral process
GO:0033365 protein localization to organelle
GO:0034063 stress granule assembly
GO:0048260 positive regulation of receptor-mediated endocytosis
GO:0070507 regulation of microtubule cytoskeleton organization
GO:0072385 minus-end-directed organelle transport along microtubule
GO:0072393 microtubule anchoring at microtubule organizing center
GO:1900275 negative regulation of phospholipase C activity
GO:1900276 regulation of proteinase activated receptor activity
GO:1900737 negative regulation of phospholipase C-activating G-protein coupled receptor signaling pathway
GO:1904781 positive regulation of protein localization to centrosome

Cellular Component:
GO:0005794 Golgi apparatus
GO:0005802 trans-Golgi network
GO:0005813 centrosome
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0016020 membrane
GO:0031410 cytoplasmic vesicle
GO:0048471 perinuclear region of cytoplasm
GO:0072517 host cell viral assembly compartment
GO:0005881 cytoplasmic microtubule
GO:0045298 tubulin complex


-  Descriptions from all associated GenBank mRNAs
  AK313430 - Homo sapiens cDNA, FLJ93969.
AK290188 - Homo sapiens cDNA FLJ77275 complete cds, highly similar to Homo sapiens bicaudal D homolog 1 (Drosophila) (BICD1), transcript variant 1, mRNA.
U90028 - Homo sapiens bicaudal-D (BICD) mRNA, complete cds.
LF384209 - JP 2014500723-A/191712: Polycomb-Associated Non-Coding RNAs.
BC136372 - Homo sapiens bicaudal D homolog 1 (Drosophila), mRNA (cDNA clone MGC:167982 IMAGE:9020359), complete cds.
AK095648 - Homo sapiens cDNA FLJ38329 fis, clone FCBBF3025252, moderately similar to Homo sapiens bicaudal-D (BICD) mRNA.
MA619786 - JP 2018138019-A/191712: Polycomb-Associated Non-Coding RNAs.
BC010091 - Homo sapiens bicaudal D homolog 1 (Drosophila), mRNA (cDNA clone IMAGE:3050215), with apparent retained intron.
LF366558 - JP 2014500723-A/174061: Polycomb-Associated Non-Coding RNAs.
JD124706 - Sequence 105730 from Patent EP1572962.
JD117879 - Sequence 98903 from Patent EP1572962.
JD126074 - Sequence 107098 from Patent EP1572962.
JD054691 - Sequence 35715 from Patent EP1572962.
MA602135 - JP 2018138019-A/174061: Polycomb-Associated Non-Coding RNAs.
LF366570 - JP 2014500723-A/174073: Polycomb-Associated Non-Coding RNAs.
LF366571 - JP 2014500723-A/174074: Polycomb-Associated Non-Coding RNAs.
U90030 - Homo sapiens bicaudal-D (BICD) mRNA, alternatively spliced, partial cds.
LF366573 - JP 2014500723-A/174076: Polycomb-Associated Non-Coding RNAs.
LF366574 - JP 2014500723-A/174077: Polycomb-Associated Non-Coding RNAs.
MA602147 - JP 2018138019-A/174073: Polycomb-Associated Non-Coding RNAs.
MA602148 - JP 2018138019-A/174074: Polycomb-Associated Non-Coding RNAs.
MA602150 - JP 2018138019-A/174076: Polycomb-Associated Non-Coding RNAs.
MA602151 - JP 2018138019-A/174077: Polycomb-Associated Non-Coding RNAs.
JD310347 - Sequence 291371 from Patent EP1572962.
JD352824 - Sequence 333848 from Patent EP1572962.
JD469389 - Sequence 450413 from Patent EP1572962.
LF207474 - JP 2014500723-A/14977: Polycomb-Associated Non-Coding RNAs.
JD279790 - Sequence 260814 from Patent EP1572962.
LF366575 - JP 2014500723-A/174078: Polycomb-Associated Non-Coding RNAs.
LF366576 - JP 2014500723-A/174079: Polycomb-Associated Non-Coding RNAs.
AL117598 - Homo sapiens mRNA; cDNA DKFZp564H1663 (from clone DKFZp564H1663).
BC047110 - Homo sapiens cDNA clone IMAGE:5312754.
MA602152 - JP 2018138019-A/174078: Polycomb-Associated Non-Coding RNAs.
MA602153 - JP 2018138019-A/174079: Polycomb-Associated Non-Coding RNAs.
MA443051 - JP 2018138019-A/14977: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q96G01 (Reactome details) participates in the following event(s):

R-HSA-8849348 RAB6:GTP and BICD homodimers bind COPI-independent Golgi-to-ER retrograde cargo
R-HSA-8849350 RAB6:GTP displaces PAFAH1B1 from dynein:dynactin complex
R-HSA-6811436 COPI-independent Golgi-to-ER retrograde traffic
R-HSA-8856688 Golgi-to-ER retrograde transport
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: A8K2C3, BICD1_HUMAN, F8W113, NR_148725, O43892, O43893, Q96G01, uc328tyu.1, uc328tyu.2
UCSC ID: ENST00000652176.1_10
RefSeq Accession: NM_001714.4
Protein: Q96G01 (aka BICD1_HUMAN or BCD1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.