Human Gene APPL1 (ENST00000288266.8_4) from GENCODE V47lift37
  Description: adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 (from RefSeq NM_012096.3)
Gencode Transcript: ENST00000288266.8_4
Gencode Gene: ENSG00000157500.12_13
Transcript (Including UTRs)
   Position: hg19 chr3:57,261,757-57,307,499 Size: 45,743 Total Exon Count: 22 Strand: +
Coding Region
   Position: hg19 chr3:57,261,912-57,303,715 Size: 41,804 Coding Exon Count: 22 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:57,261,757-57,307,499)mRNA (may differ from genome)Protein (709 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DP13A_HUMAN
DESCRIPTION: RecName: Full=DCC-interacting protein 13-alpha; Short=Dip13-alpha; AltName: Full=Adapter protein containing PH domain, PTB domain and leucine zipper motif 1;
FUNCTION: Required for the regulation of cell proliferation in response to extracellular signals from an early endosomal compartment. Links Rab5 to nuclear signal transduction.
SUBUNIT: Binds RAB5A/Rab5 through an N-terminal domain. This interaction is essential for its recruitment to endosomal membranes as well as its role in cell proliferation. Binds DCC and the catalytic domain of the inactive form of AKT2 through its PID domain. Binds PIK3CA and subunits of the NuRD/MeCP1 complex. Interacts with OCRL and INPP5B.
INTERACTION: P35609:ACTN2; NbExp=2; IntAct=EBI-741243, EBI-77797; Q96A54:ADIPOR1; NbExp=6; IntAct=EBI-741243, EBI-1632076; Q91VH1:Adipor1 (xeno); NbExp=3; IntAct=EBI-741243, EBI-992398; Q86V24:ADIPOR2; NbExp=3; IntAct=EBI-741243, EBI-1769445; Q03001:DST; NbExp=3; IntAct=EBI-741243, EBI-310758; O75923:DYSF; NbExp=2; IntAct=EBI-741243, EBI-2799016; Q8WXH0:SYNE2; NbExp=3; IntAct=EBI-741243, EBI-2372294;
SUBCELLULAR LOCATION: Early endosome membrane; Peripheral membrane protein. Nucleus. Note=Early endosomal membrane-bound and nuclear. Translocated into the nucleus upon release from endosomal membranes following internalization of EGF.
TISSUE SPECIFICITY: High levels in heart, ovary, pancreas and skeletal muscle.
DOMAIN: Overexpression of an N-terminal domain (residues 1-319) or a C-terminal region (residues 273-709) has a proapoptotic effect.
DOMAIN: The F&H motif, an approximately 12-13 amino-acid sequence centered around Phe and His residues, is essential for binding to OCRL and INPP5B (PubMed:21666675).
PTM: Phosphorylated upon DNA damage, probably by ATM or ATR.
PTM: Phosophorylation at Ser-410 by PKA severely impairs binding to OCRL.
SIMILARITY: Contains 1 PH domain.
SIMILARITY: Contains 1 PID domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: APPL1
Diseases sorted by gene-association score: maturity-onset diabetes of the young, type 14* (1350), maturity-onset diabetes of the young* (110), deafness, autosomal dominant 59 (12), deafness, autosomal recessive 65 (12), myopathy of extraocular muscle (12), skin lipoma (11), deafness, autosomal dominant 67 (9), deafness, autosomal dominant 53 (9), deafness, autosomal recessive 5 (9), ichthyosis, congenital, autosomal recessive 7 (8), deafness, autosomal dominant 23 (8), deafness, autosomal recessive 35 (7), lowe syndrome (7), chorioangioma (7), chromosome 15q13.3 microdeletion syndrome (7), chromosome 18p deletion syndrome (5), hypotropia (5), hemangioma of intra-abdominal structure (5), deafness, autosomal recessive 63 (5), deafness, autosomal dominant 17 (5), ichthyosis, congenital, autosomal recessive 1 (4), tukel syndrome (4), acute contagious conjunctivitis (4), cogan syndrome (4), chromosomal disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.19 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 296.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -90.30155-0.583 Picture PostScript Text
3' UTR -924.903784-0.244 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011993 - PH_like_dom
IPR001849 - Pleckstrin_homology
IPR006020 - PTyr_interaction_dom

Pfam Domains:
PF00169 - PH domain
PF00640 - Phosphotyrosine interaction domain (PTB/PID)
PF16746 - BAR domain of APPL family

SCOP Domains:
103657 - BAR/IMD domain-like
50729 - PH domain-like
52540 - P-loop containing nucleoside triphosphate hydrolases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2EJ8 - X-ray MuPIT 2ELA - X-ray MuPIT 2ELB - X-ray MuPIT 2Q12 - X-ray MuPIT 2Q13 - X-ray MuPIT 2Z0N - X-ray MuPIT 2Z0O - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q9UKG1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0042802 identical protein binding
GO:0043422 protein kinase B binding

Biological Process:
GO:0007049 cell cycle
GO:0007165 signal transduction
GO:0008283 cell proliferation
GO:0008286 insulin receptor signaling pathway
GO:0046324 regulation of glucose import
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand
GO:1903076 regulation of protein localization to plasma membrane

Cellular Component:
GO:0005634 nucleus
GO:0005768 endosome
GO:0005769 early endosome
GO:0005829 cytosol
GO:0010008 endosome membrane
GO:0012506 vesicle membrane
GO:0016020 membrane
GO:0031901 early endosome membrane
GO:0070062 extracellular exosome
GO:0016581 NuRD complex


-  Descriptions from all associated GenBank mRNAs
  BC028599 - Homo sapiens adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1, mRNA (cDNA clone MGC:33057 IMAGE:4829430), complete cds.
AK299008 - Homo sapiens cDNA FLJ51723 partial cds, highly similar to DCC-interacting protein 13 alpha.
AK310716 - Homo sapiens cDNA, FLJ17758.
AF169797 - Homo sapiens adaptor protein APPL mRNA, complete cds.
AF424738 - Homo sapiens signaling adaptor protein DIP13alpha mRNA, complete cds.
CU688526 - Synthetic construct Homo sapiens gateway clone IMAGE:100020373 5' read APPL1 mRNA.
MG569951 - Homo sapiens APPL1 mRNA, complete cds, alternatively spliced.
AB587353 - Synthetic construct DNA, clone: pF1KA1428, Homo sapiens APPL1 gene for adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1, without stop codon, in Flexi system.
JF432301 - Synthetic construct Homo sapiens clone IMAGE:100073482 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 (APPL1) gene, encodes complete protein.
KJ898588 - Synthetic construct Homo sapiens clone ccsbBroadEn_07982 APPL1 gene, encodes complete protein.
AB037849 - Homo sapiens KIAA1428 mRNA for KIAA1428 protein.
BC010911 - Homo sapiens adaptor protein containing pH domain, PTB domain and leucine zipper motif 1, mRNA (cDNA clone IMAGE:4295177), with apparent retained intron.
JD478367 - Sequence 459391 from Patent EP1572962.
JD109744 - Sequence 90768 from Patent EP1572962.
JD174574 - Sequence 155598 from Patent EP1572962.
JD359552 - Sequence 340576 from Patent EP1572962.
JD546192 - Sequence 527216 from Patent EP1572962.
JD428207 - Sequence 409231 from Patent EP1572962.
JD524875 - Sequence 505899 from Patent EP1572962.
JD147725 - Sequence 128749 from Patent EP1572962.
JD277556 - Sequence 258580 from Patent EP1572962.
JD562715 - Sequence 543739 from Patent EP1572962.
JD208186 - Sequence 189210 from Patent EP1572962.
JD171897 - Sequence 152921 from Patent EP1572962.
JD440709 - Sequence 421733 from Patent EP1572962.
DQ599132 - Homo sapiens piRNA piR-37198, complete sequence.
JD563947 - Sequence 544971 from Patent EP1572962.
JD236342 - Sequence 217366 from Patent EP1572962.
JD467618 - Sequence 448642 from Patent EP1572962.
JD447634 - Sequence 428658 from Patent EP1572962.
JD046426 - Sequence 27450 from Patent EP1572962.
JD089228 - Sequence 70252 from Patent EP1572962.
JD225081 - Sequence 206105 from Patent EP1572962.
JD307843 - Sequence 288867 from Patent EP1572962.
JD265729 - Sequence 246753 from Patent EP1572962.
JD506591 - Sequence 487615 from Patent EP1572962.
JD183090 - Sequence 164114 from Patent EP1572962.
JD087182 - Sequence 68206 from Patent EP1572962.
JD262253 - Sequence 243277 from Patent EP1572962.
JD165591 - Sequence 146615 from Patent EP1572962.
JD294720 - Sequence 275744 from Patent EP1572962.
JD544778 - Sequence 525802 from Patent EP1572962.
JD484645 - Sequence 465669 from Patent EP1572962.
JD287357 - Sequence 268381 from Patent EP1572962.
JD155078 - Sequence 136102 from Patent EP1572962.
JD280227 - Sequence 261251 from Patent EP1572962.
JD551578 - Sequence 532602 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UKG1 (Reactome details) participates in the following event(s):

R-HSA-373717 DCC interacts with DIP13alpha
R-HSA-373700 Caspase-9 binds DCC:DIP13alpha complex
R-HSA-418845 Activation of caspase-3
R-HSA-418889 Ligand-independent caspase activation via DCC
R-HSA-5357769 Caspase activation via extrinsic apoptotic signalling pathway
R-HSA-109581 Apoptosis
R-HSA-5357801 Programmed Cell Death

-  Other Names for This Gene
  Alternate Gene Symbols: APPL , APPL1 , DIP13A, DP13A_HUMAN, ENST00000288266.1, ENST00000288266.2, ENST00000288266.3, ENST00000288266.4, ENST00000288266.5, ENST00000288266.6, ENST00000288266.7, KIAA1428 , NM_012096, Q9P2B9, Q9UKG1, uc317kpj.1, uc317kpj.2
UCSC ID: ENST00000288266.8_4
RefSeq Accession: NM_012096.3
Protein: Q9UKG1 (aka DP13A_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene APPL1:
mody-ov (Maturity-Onset Diabetes of the Young Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.