Human Gene AOAH (ENST00000617537.5_11) from GENCODE V47lift37
  Description: acyloxyacyl hydrolase, transcript variant 1 (from RefSeq NM_001637.4)
Gencode Transcript: ENST00000617537.5_11
Gencode Gene: ENSG00000136250.13_15
Transcript (Including UTRs)
   Position: hg19 chr7:36,552,549-36,764,099 Size: 211,551 Total Exon Count: 21 Strand: -
Coding Region
   Position: hg19 chr7:36,552,858-36,763,753 Size: 210,896 Coding Exon Count: 21 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:36,552,549-36,764,099)mRNA (may differ from genome)Protein (575 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AOAH_HUMAN
DESCRIPTION: RecName: Full=Acyloxyacyl hydrolase; EC=3.1.1.77; Contains: RecName: Full=Acyloxyacyl hydrolase small subunit; Contains: RecName: Full=Acyloxyacyl hydrolase large subunit; Flags: Precursor;
FUNCTION: Removes the secondary (acyloxyacyl-linked) fatty acyl chains from the lipid A region of bacterial lipopolysaccharides.
CATALYTIC ACTIVITY: 3-(acyloxy)acyl group of bacterial toxin = 3- hydroxyacyl group of bacterial toxin + a fatty acid.
SUBUNIT: Heterodimer.
SUBCELLULAR LOCATION: Secreted.
PTM: Both subunits contain a number of cysteine residues that may form disulfide bridges.
SIMILARITY: Contains 1 saposin B-type domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -118.50346-0.342 Picture PostScript Text
3' UTR -85.60309-0.277 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013830 - Esterase_SGNH_hydro-type
IPR013831 - Esterase_SGNH_hydro-type_subgr
IPR001087 - Lipase_GDSL
IPR008138 - SapB_2
IPR011001 - Saposin-like
IPR008139 - SaposinB

Pfam Domains:
PF00657 - GDSL-like Lipase/Acylhydrolase
PF03489 - Saposin-like type B, region 2
PF11617 - Putative metal-binding motif

SCOP Domains:
47862 - Saposin
52266 - SGNH hydrolase

ModBase Predicted Comparative 3D Structure on P28039
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005509 calcium ion binding
GO:0016787 hydrolase activity
GO:0016788 hydrolase activity, acting on ester bonds
GO:0050528 acyloxyacyl hydrolase activity

Biological Process:
GO:0006631 fatty acid metabolic process
GO:0009104 lipopolysaccharide catabolic process

Cellular Component:
GO:0005576 extracellular region
GO:0031410 cytoplasmic vesicle


-  Descriptions from all associated GenBank mRNAs
  AK223476 - Homo sapiens mRNA for acyloxyacyl hydrolase precursor variant, clone: FCC118D08.
BC025698 - Homo sapiens acyloxyacyl hydrolase (neutrophil), mRNA (cDNA clone MGC:34634 IMAGE:5221679), complete cds.
M62840 - Human acyloxyacyl hydrolase mRNA, complete cds.
AK297016 - Homo sapiens cDNA FLJ50796 complete cds, highly similar to Acyloxyacyl hydrolase precursor (EC 3.1.1.77).
AK308215 - Homo sapiens cDNA, FLJ98163.
KJ896434 - Synthetic construct Homo sapiens clone ccsbBroadEn_05828 AOAH gene, encodes complete protein.
KR710658 - Synthetic construct Homo sapiens clone CCSBHm_00015430 AOAH (AOAH) mRNA, encodes complete protein.
DQ890940 - Synthetic construct clone IMAGE:100003570; FLH167729.01X; RZPDo839E0790D acyloxyacyl hydrolase (neutrophil) (AOAH) gene, encodes complete protein.
DQ894100 - Synthetic construct Homo sapiens clone IMAGE:100008560; FLH167725.01L; RZPDo839E0789D acyloxyacyl hydrolase (neutrophil) (AOAH) gene, encodes complete protein.
AK298644 - Homo sapiens cDNA FLJ51934 complete cds, highly similar to Acyloxyacyl hydrolase precursor (EC 3.1.1.77).
JD157747 - Sequence 138771 from Patent EP1572962.
JD250403 - Sequence 231427 from Patent EP1572962.
JD098597 - Sequence 79621 from Patent EP1572962.
JD067554 - Sequence 48578 from Patent EP1572962.
JD215777 - Sequence 196801 from Patent EP1572962.
JD365783 - Sequence 346807 from Patent EP1572962.
JD451847 - Sequence 432871 from Patent EP1572962.
JD076467 - Sequence 57491 from Patent EP1572962.
JD218855 - Sequence 199879 from Patent EP1572962.
JD327296 - Sequence 308320 from Patent EP1572962.
JD131944 - Sequence 112968 from Patent EP1572962.
JD268362 - Sequence 249386 from Patent EP1572962.
JD245841 - Sequence 226865 from Patent EP1572962.
JD549078 - Sequence 530102 from Patent EP1572962.
JD543594 - Sequence 524618 from Patent EP1572962.
JD037748 - Sequence 18772 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A4D1Y5, AOAH , AOAH_HUMAN, B7Z490, ENST00000617537.1, ENST00000617537.2, ENST00000617537.3, ENST00000617537.4, NM_001637, P28039, Q53F13, uc327rdo.1, uc327rdo.2
UCSC ID: ENST00000617537.5_11
RefSeq Accession: NM_001637.4
Protein: P28039 (aka AOAH_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.