Human Gene ANGPT1 (ENST00000517746.6_12) from GENCODE V47lift37
  Description: angiopoietin 1, transcript variant 1 (from RefSeq NM_001146.5)
Gencode Transcript: ENST00000517746.6_12
Gencode Gene: ENSG00000154188.10_15
Transcript (Including UTRs)
   Position: hg19 chr8:108,261,710-108,510,146 Size: 248,437 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chr8:108,264,083-108,509,786 Size: 245,704 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:108,261,710-108,510,146)mRNA (may differ from genome)Protein (498 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ANGP1_HUMAN
DESCRIPTION: RecName: Full=Angiopoietin-1; Short=ANG-1; Flags: Precursor;
FUNCTION: Binds and activates TEK/TIE2 receptor by inducing its dimerization and tyrosine phosphorylation. Plays an important role in the regulation of angiogenesis, endothelial cell survival, proliferation, migration, adhesion and cell spreading, reorganization of the actin cytoskeleton, but also maintenance of vascular quiescence. Required for normal angiogenesis and heart development during embryogenesis. After birth, activates or inhibits angiogenesis, depending on the context. Inhibits angiogenesis and promotes vascular stability in quiescent vessels, where endothelial cells have tight contacts. In quiescent vessels, ANGPT1 oligomers recruit TEK to cell-cell contacts, forming complexes with TEK molecules from adjoining cells, and this leads to preferential activation of phosphatidylinositol 3-kinase and the AKT1 signaling cascades. In migrating endothelial cells that lack cell-cell adhesions, ANGT1 recruits TEK to contacts with the extracellular matrix, leading to the formation of focal adhesion complexes, activation of PTK2/FAK and of the downstream kinases MAPK1/ERK2 and MAPK3/ERK1, and ultimately to the stimulation of sprouting angiogenesis. Mediates blood vessel maturation/stability. Implicated in endothelial developmental processes later and distinct from that of VEGF. Appears to play a crucial role in mediating reciprocal interactions between the endothelium and surrounding matrix and mesenchyme.
SUBUNIT: Homooligomer. Interacts with TEK/TIE2.
SUBCELLULAR LOCATION: Secreted.
PTM: Glycosylated.
MISCELLANEOUS: It may have a potential therapeutic utility since it can be used for specifically targeting tumor vasculature or for promoting angiogenic processes in certain organs such as an ischemic heart.
SIMILARITY: Contains 1 fibrinogen C-terminal domain.
SEQUENCE CAUTION: Sequence=BAA02793.2; Type=Erroneous initiation;
WEB RESOURCE: Name=Wikipedia; Note=Angiopoietin entry; URL="http://en.wikipedia.org/wiki/Angiopoietin";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ANGPT1
Diseases sorted by gene-association score: pyogenic granuloma (11), macrophage activation syndrome (10), twin-to-twin transfusion syndrome (10), funisitis (9), epileptic encephalopathy, childhood-onset (9), chronic myocardial ischemia (9), placenta accreta (8), pulmonary hypertension (7), deep angioma (6), spongiotic dermatitis (6), lipodermatosclerosis (6), intramuscular hemangioma (5), hemangioma (3), rheumatoid arthritis (3), vascular disease (3), malaria (2), myocardial infarction (1), exudative vitreoretinopathy 1 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.11 RPKM in Cells - Cultured fibroblasts
Total median expression: 138.79 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -68.40360-0.190 Picture PostScript Text
3' UTR -498.602373-0.210 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002181 - Fibrinogen_a/b/g_C
IPR014716 - Fibrinogen_a/b/g_C_1
IPR014715 - Fibrinogen_a/b/g_C_2
IPR020837 - Fibrinogen_CS

Pfam Domains:
PF00147 - Fibrinogen beta and gamma chains, C-terminal globular domain

SCOP Domains:
56496 - Fibrinogen C-terminal domain-like

ModBase Predicted Comparative 3D Structure on Q15389
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005088 Ras guanyl-nucleotide exchange factor activity
GO:0005102 receptor binding
GO:0005515 protein binding
GO:0030971 receptor tyrosine kinase binding

Biological Process:
GO:0000165 MAPK cascade
GO:0001525 angiogenesis
GO:0001701 in utero embryonic development
GO:0001933 negative regulation of protein phosphorylation
GO:0002040 sprouting angiogenesis
GO:0002092 positive regulation of receptor internalization
GO:0002740 negative regulation of cytokine secretion involved in immune response
GO:0007162 negative regulation of cell adhesion
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007171 activation of transmembrane receptor protein tyrosine kinase activity
GO:0007275 multicellular organism development
GO:0010595 positive regulation of endothelial cell migration
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling
GO:0014842 regulation of skeletal muscle satellite cell proliferation
GO:0030097 hemopoiesis
GO:0030154 cell differentiation
GO:0030210 heparin biosynthetic process
GO:0031398 positive regulation of protein ubiquitination
GO:0031589 cell-substrate adhesion
GO:0032680 regulation of tumor necrosis factor production
GO:0033138 positive regulation of peptidyl-serine phosphorylation
GO:0034394 protein localization to cell surface
GO:0042308 negative regulation of protein import into nucleus
GO:0043066 negative regulation of apoptotic process
GO:0043116 negative regulation of vascular permeability
GO:0043122 regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043393 regulation of protein binding
GO:0043524 negative regulation of neuron apoptotic process
GO:0043536 positive regulation of blood vessel endothelial cell migration
GO:0045785 positive regulation of cell adhesion
GO:0048014 Tie signaling pathway
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation
GO:0050900 leukocyte migration
GO:0050918 positive chemotaxis
GO:0051897 positive regulation of protein kinase B signaling
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0072012 glomerulus vasculature development
GO:2000352 negative regulation of endothelial cell apoptotic process
GO:2000446 regulation of macrophage migration inhibitory factor signaling pathway
GO:0001936 regulation of endothelial cell proliferation

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005622 intracellular
GO:0005886 plasma membrane
GO:0005902 microvillus
GO:0045121 membrane raft
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC152411 - Homo sapiens angiopoietin 1, mRNA (cDNA clone MGC:176635 IMAGE:8862514), complete cds.
BC152419 - Homo sapiens angiopoietin 1, mRNA (cDNA clone MGC:176650 IMAGE:8862529), complete cds.
D13628 - Homo sapiens KIAA0003 mRNA, complete cds.
BX648814 - Homo sapiens mRNA; cDNA DKFZp686L10222 (from clone DKFZp686L10222).
AK304717 - Homo sapiens cDNA FLJ61084 complete cds, highly similar to Angiopoietin-1 precursor.
AK300319 - Homo sapiens cDNA FLJ56604 complete cds, highly similar to Angiopoietin-1 precursor.
U83508 - Human angiopoietin-1 mRNA, complete cds.
AY055342 - Homo sapiens angiopoietin-A (AngA) mRNA, complete cds.
EU831933 - Synthetic construct Homo sapiens clone HAIB:100066962; DKFZo008C1023 angiopoietin 1 protein (ANGPT1) gene, encodes complete protein.
AB084454 - Homo sapiens ang1 mRNA for angiopoietin-1, complete cds.
AY121504 - Homo sapiens angiopoietin 1 variant mRNA, complete cds.
AY124380 - Homo sapiens angiopoietin 1 (ANG1) mRNA, complete cds.
EU832028 - Synthetic construct Homo sapiens clone HAIB:100067057; DKFZo004C1024 angiopoietin 1 protein (ANGPT1) gene, encodes complete protein.
BC166662 - Synthetic construct Homo sapiens clone IMAGE:100066388, MGC:195525 angiopoietin 1 (ANGPT1) mRNA, encodes complete protein.
AB462944 - Synthetic construct DNA, clone: pF1KA0003, Homo sapiens ANGPT1 gene for angiopoietin 1, without stop codon, in Flexi system.
JD491148 - Sequence 472172 from Patent EP1572962.
JD350557 - Sequence 331581 from Patent EP1572962.
JD513228 - Sequence 494252 from Patent EP1572962.
JD398525 - Sequence 379549 from Patent EP1572962.
JD301297 - Sequence 282321 from Patent EP1572962.
JD315820 - Sequence 296844 from Patent EP1572962.
JD431546 - Sequence 412570 from Patent EP1572962.
JD506567 - Sequence 487591 from Patent EP1572962.
JD241024 - Sequence 222048 from Patent EP1572962.
JD231647 - Sequence 212671 from Patent EP1572962.
JD455841 - Sequence 436865 from Patent EP1572962.
JD563348 - Sequence 544372 from Patent EP1572962.
JD315462 - Sequence 296486 from Patent EP1572962.
JD145279 - Sequence 126303 from Patent EP1572962.
JD360604 - Sequence 341628 from Patent EP1572962.
JD328028 - Sequence 309052 from Patent EP1572962.
JD058361 - Sequence 39385 from Patent EP1572962.
JD348007 - Sequence 329031 from Patent EP1572962.
JD525637 - Sequence 506661 from Patent EP1572962.
BC029406 - Homo sapiens angiopoietin 1, mRNA (cDNA clone IMAGE:4805448), complete cds.
KJ901283 - Synthetic construct Homo sapiens clone ccsbBroadEn_10677 ANGPT1 gene, encodes complete protein.
CU688642 - Synthetic construct Homo sapiens gateway clone IMAGE:100023022 5' read ANGPT1 mRNA.
JD340623 - Sequence 321647 from Patent EP1572962.
JD507566 - Sequence 488590 from Patent EP1572962.
JD186511 - Sequence 167535 from Patent EP1572962.
JD277079 - Sequence 258103 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q15389 (Reactome details) participates in the following event(s):

R-HSA-204779 Interaction of Tie2 with Ang1
R-HSA-204773 Interaction of Tie2 and Grb7
R-HSA-204798 Interaction of Tie2 and p85 of PI3K
R-HSA-204813 Interaction of Tie2 and Grb14
R-HSA-204850 Interaction of Tie2 and Dok-2
R-HSA-204861 Interaction of Tie2 and Shc1
R-HSA-204871 Interaction of Tie2 and Grb2
R-HSA-204873 Interaction of Tie2 and Shp2
R-HSA-210881 Dimerization of Tie2/Ang1 complex
R-HSA-210974 Interaction of SOS-1 to Tie2 bound Grb2
R-HSA-210872 Trans-phosphorylation of Tie2
R-HSA-210977 Sos-mediated nucleotide exchange of Ras (Tie2 receptor:Grb2:Sos)
R-HSA-5672965 RAS GEFs promote RAS nucleotide exchange
R-HSA-210993 Tie2 Signaling
R-HSA-202733 Cell surface interactions at the vascular wall
R-HSA-109582 Hemostasis
R-HSA-5673001 RAF/MAP kinase cascade
R-HSA-5684996 MAPK1/MAPK3 signaling
R-HSA-5683057 MAPK family signaling cascades
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ANGP1_HUMAN, ENST00000517746.1, ENST00000517746.2, ENST00000517746.3, ENST00000517746.4, ENST00000517746.5, KIAA0003, NM_001146, Q15389, Q5HYA0, uc323pxs.1, uc323pxs.2
UCSC ID: ENST00000517746.6_12
RefSeq Accession: NM_001146.5
Protein: Q15389 (aka ANGP1_HUMAN or AGP1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.