Human Gene AASS (ENST00000417368.7_7) from GENCODE V47lift37
  Description: aminoadipate-semialdehyde synthase (from RefSeq NM_005763.4)
Gencode Transcript: ENST00000417368.7_7
Gencode Gene: ENSG00000008311.16_17
Transcript (Including UTRs)
   Position: hg19 chr7:121,713,603-121,784,303 Size: 70,701 Total Exon Count: 24 Strand: -
Coding Region
   Position: hg19 chr7:121,716,543-121,773,780 Size: 57,238 Coding Exon Count: 23 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:121,713,603-121,784,303)mRNA (may differ from genome)Protein (926 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AASS_HUMAN
DESCRIPTION: RecName: Full=Alpha-aminoadipic semialdehyde synthase, mitochondrial; AltName: Full=LKR/SDH; Includes: RecName: Full=Lysine ketoglutarate reductase; Short=LKR; Short=LOR; EC=1.5.1.8; Includes: RecName: Full=Saccharopine dehydrogenase; Short=SDH; EC=1.5.1.9; Flags: Precursor;
FUNCTION: Bifunctional enzyme that catalyzes the first two steps in lysine degradation. The N-terminal and the C-terminal contain lysine-ketoglutarate reductase and saccharopine dehydrogenase activity, respectively.
CATALYTIC ACTIVITY: N(6)-(L-1,3-dicarboxypropyl)-L-lysine + NADP(+) + H(2)O = L-lysine + 2-oxoglutarate + NADPH.
CATALYTIC ACTIVITY: N(6)-(L-1,3-dicarboxypropyl)-L-lysine + NAD(+) + H(2)O = L-glutamate + (S)-2-amino-6-oxohexanoate + NADH.
PATHWAY: Amino-acid degradation; L-lysine degradation via saccharopine pathway; glutaryl-CoA from L-lysine: step 1/6.
PATHWAY: Amino-acid degradation; L-lysine degradation via saccharopine pathway; glutaryl-CoA from L-lysine: step 2/6.
SUBUNIT: Homodimer (By similarity).
SUBCELLULAR LOCATION: Mitochondrion (By similarity).
TISSUE SPECIFICITY: Expressed in all 16 tissues examined with highest expression in the liver.
INDUCTION: Induced by starvation (By similarity).
DISEASE: Defects in AASS are the cause of hyperlysinemia (HYPLYS) [MIM:238700]. Hyperlysinemia is an autosomal recessive condition characterized by hyperlysinemia lysinuria and variable saccharopinuria.
SIMILARITY: In the N-terminal section; belongs to the AlaDH/PNT family.
SIMILARITY: In the C-terminal section; belongs to the saccharopine dehydrogenase family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/AASS";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: AASS
Diseases sorted by gene-association score: hyperlysinemia* (1399), saccharopinuria* (400), hyperornithinemia-hyperammonemia-homocitrullinemia syndrome (12), 2,4-dienoyl-coa reductase deficiency (11), pyrimidine metabolic disorder (7)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 32.76 RPKM in Ovary
Total median expression: 423.74 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -35.50104-0.341 Picture PostScript Text
3' UTR -702.702940-0.239 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007886 - AlaDH/PNT_N
IPR007698 - AlaDH/PNT_NAD(H)-bd
IPR016040 - NAD(P)-bd_dom
IPR005097 - Saccharopine_DH/HSpermid_syn

Pfam Domains:
PF03435 - Saccharopine dehydrogenase NADP binding domain
PF05222 - Alanine dehydrogenase/PNT, N-terminal domain
PF16653 - Saccharopine dehydrogenase C-terminal domain

SCOP Domains:
51556 - Metallo-dependent hydrolases
51735 - NAD(P)-binding Rossmann-fold domains
52283 - Formate/glycerate dehydrogenase catalytic domain-like
55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain

ModBase Predicted Comparative 3D Structure on Q9UDR5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003824 catalytic activity
GO:0004753 saccharopine dehydrogenase activity
GO:0016491 oxidoreductase activity
GO:0047130 saccharopine dehydrogenase (NADP+, L-lysine-forming) activity
GO:0047131 saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity

Biological Process:
GO:0006091 generation of precursor metabolites and energy
GO:0006554 lysine catabolic process
GO:0008152 metabolic process
GO:0019477 L-lysine catabolic process
GO:0019878 lysine biosynthetic process via aminoadipic acid
GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine
GO:0051262 protein tetramerization
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005739 mitochondrion
GO:0005759 mitochondrial matrix
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  AJ007714 - Homo sapiens mRNA for lysine-ketoglutarate reductase/saccharopine dehydrogenase, partial CDS.
AK294326 - Homo sapiens cDNA FLJ57358 complete cds, highly similar to Alpha-aminoadipic semialdehyde synthase, mitochondrial precursor.
AF229180 - Homo sapiens alpha-aminoadipate semialdehyde synthase mRNA, complete cds.
BC144246 - Homo sapiens cDNA clone IMAGE:9052766, containing frame-shift errors.
BC144247 - Homo sapiens cDNA clone IMAGE:9052767.
AK225898 - Homo sapiens mRNA for aminoadipate-semialdehyde synthase variant, clone: FCC120E04.
BC172503 - Synthetic construct Homo sapiens clone IMAGE:100069197, MGC:199208 aminoadipate-semialdehyde synthase (AASS) mRNA, encodes complete protein.
BC156456 - Synthetic construct Homo sapiens clone IMAGE:100063062, MGC:190680 aminoadipate-semialdehyde synthase (AASS) mRNA, encodes complete protein.
AK023446 - Homo sapiens cDNA FLJ13384 fis, clone PLACE1001062, highly similar to Alpha-aminoadipic semialdehyde synthase, mitochondrial precursor.
JD281269 - Sequence 262293 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
LYSINE-DEG1-PWY - L-lysine degradation (saccharopine pathway)

Reactome (by CSHL, EBI, and GO)

Protein Q9UDR5 (Reactome details) participates in the following event(s):

R-HSA-70938 lysine + alpha-ketoglutarate +NADPH + H+ => saccharopine + NADP+ + H2O
R-HSA-70940 saccharopine + NAD+ + H2O => alpha-aminoadipic semialdehyde + glutamate + NADH + H+
R-HSA-71064 Lysine catabolism
R-HSA-6788656 Histidine, lysine, phenylalanine, tyrosine, proline and tryptophan catabolism
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: AASS , AASS_HUMAN, ENST00000417368.1, ENST00000417368.2, ENST00000417368.3, ENST00000417368.4, ENST00000417368.5, ENST00000417368.6, NM_005763, O95462, Q9UDR5, uc319nal.1, uc319nal.2
UCSC ID: ENST00000417368.7_7
RefSeq Accession: NM_005763.4
Protein: Q9UDR5 (aka AASS_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.