Human Gene AANAT (ENST00000392492.8_6) from GENCODE V47lift37
  Description: aralkylamine N-acetyltransferase, transcript variant 3 (from RefSeq NR_110548.2)
Gencode Transcript: ENST00000392492.8_6
Gencode Gene: ENSG00000129673.10_8
Transcript (Including UTRs)
   Position: hg19 chr17:74,463,685-74,466,199 Size: 2,515 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr17:74,464,829-74,466,052 Size: 1,224 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:74,463,685-74,466,199)mRNA (may differ from genome)Protein (207 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: SNAT_HUMAN
DESCRIPTION: RecName: Full=Serotonin N-acetyltransferase; Short=Serotonin acetylase; EC=2.3.1.87; AltName: Full=Aralkylamine N-acetyltransferase; Short=AA-NAT;
FUNCTION: Controls the night/day rhythm of melatonin production in the pineal gland. Catalyzes the N-acetylation of serotonin into N- acetylserotonin, the penultimate step in the synthesis of melatonin.
CATALYTIC ACTIVITY: Acetyl-CoA + a 2-arylethylamine = CoA + an N- acetyl-2-arylethylamine.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=0.13 mM for tryptamine; KM=2.6 mM for 5-hydroxytryptamine; KM=0.55 mM for phenylethylamine; KM=10.6 mM for tyramine;
PATHWAY: Aromatic compound metabolism; melatonin biosynthesis; melatonin from serotonin: step 1/2.
SUBUNIT: Monomer (By similarity). Interacts with several 14-3-3 proteins, including YWHAB, YWHAE, YWHAG and YWHAZ, preferentially when phosphorylated at Thr-31. Phosphorylation on Ser-205 also allows binding to YWHAZ, but with lower affinity. The interaction with YWHAZ considerably increases affinity for arylalkylamines and acetyl-CoA and protects the enzyme from dephosphorylation and proteasomal degradation (By similarity). It may also prevent thiol-dependent inactivation (By similarity).
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Highly expressed in pineal gland and at lower levels in the retina. Weak expression in several brain regions and in the pituitary gland.
PTM: cAMP-dependent phosphorylation on both N-terminal Thr-31 and C-terminal Ser-205 regulates AANAT activity by promoting interaction with 14-3-3 proteins.
DISEASE: Defects in AANAT are a cause of susceptibility to delayed sleep phase syndrome (DSPS) [MIM:614163]. A circadian rhythm sleep disorder characterized by sleep-onset insomnia and difficulty in awakening at the desired time. Patients with DSPS have chronic difficulty in adjusting their sleep-onset and wake-up times to occupational, school, and social activities. Note=Susceptibility to delayed sleep phase syndrome can be conferred by variant Thr- 129. Thr-129 shows a significantly higher frequency in affected individuals than in healthy controls.
SIMILARITY: Belongs to the acetyltransferase family. AANAT subfamily.
SIMILARITY: Contains 1 N-acetyltransferase domain.
WEB RESOURCE: Name=SHMPD; Note=The Singapore human mutation and polymorphism database; URL="http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=AANAT";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: AANAT
Diseases sorted by gene-association score: dissociative amnesia (11), dissociative disorder (9), pineocytoma (7), advanced sleep phase syndrome (6), amyotrophic neuralgia (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 3.03 RPKM in Testis
Total median expression: 10.37 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -90.00200-0.450 Picture PostScript Text
3' UTR -52.70147-0.359 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016181 - Acyl_CoA_acyltransferase
IPR000182 - GNAT_dom

Pfam Domains:
PF00583 - Acetyltransferase (GNAT) family
PF13673 - Acetyltransferase (GNAT) domain

SCOP Domains:
55729 - Acyl-CoA N-acyltransferases (Nat)

ModBase Predicted Comparative 3D Structure on Q16613
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004059 aralkylamine N-acetyltransferase activity
GO:0004060 arylamine N-acetyltransferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0016746 transferase activity, transferring acyl groups
GO:0071889 14-3-3 protein binding

Biological Process:
GO:0006474 N-terminal protein amino acid acetylation
GO:0007623 circadian rhythm
GO:0009416 response to light stimulus
GO:0009648 photoperiodism
GO:0010043 response to zinc ion
GO:0014070 response to organic cyclic compound
GO:0030187 melatonin biosynthetic process
GO:0032868 response to insulin
GO:0034097 response to cytokine
GO:0034695 response to prostaglandin E
GO:0046219 indolalkylamine biosynthetic process
GO:0046688 response to copper ion
GO:0048511 rhythmic process
GO:0051412 response to corticosterone
GO:0051591 response to cAMP
GO:0051592 response to calcium ion
GO:0071320 cellular response to cAMP
GO:1901652 response to peptide

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  BC092430 - Homo sapiens arylalkylamine N-acetyltransferase, mRNA (cDNA clone MGC:103015 IMAGE:30378410), complete cds.
U40347 - Human serotonin N-acetyltransferase mRNA, complete cds.
AB593119 - Homo sapiens AANAT mRNA for serotonin N-acetyltransferase, complete cds, clone: HP07380-RBd29A02.
BC069434 - Homo sapiens arylalkylamine N-acetyltransferase, mRNA (cDNA clone MGC:97020 IMAGE:7262229), complete cds.
BC126332 - Homo sapiens arylalkylamine N-acetyltransferase, mRNA (cDNA clone MGC:161610 IMAGE:8992048), complete cds.
BC126334 - Homo sapiens arylalkylamine N-acetyltransferase, mRNA (cDNA clone MGC:161612 IMAGE:8992050), complete cds.
BC143989 - Homo sapiens cDNA clone IMAGE:9052507, with apparent retained intron.
CU686808 - Synthetic construct Homo sapiens gateway clone IMAGE:100022550 5' read AANAT mRNA.
HQ448439 - Synthetic construct Homo sapiens clone IMAGE:100071867; CCSB013872_02 arylalkylamine N-acetyltransferase (AANAT) gene, encodes complete protein.
AB528697 - Synthetic construct DNA, clone: pF1KB6929, Homo sapiens AANAT gene for arylalkylamine N-acetyltransferase, without stop codon, in Flexi system.
KJ890608 - Synthetic construct Homo sapiens clone ccsbBroadEn_00002 AANAT gene, encodes complete protein.
KR711343 - Synthetic construct Homo sapiens clone CCSBHm_00022963 AANAT (AANAT) mRNA, encodes complete protein.
KR712247 - Synthetic construct Homo sapiens clone CCSBHm_00900207 AANAT (AANAT) mRNA, encodes complete protein.
AY055827 - Homo sapiens serotonin N-acetyltransferase mRNA, aberrantly spliced.
JD157133 - Sequence 138157 from Patent EP1572962.
JD121942 - Sequence 102966 from Patent EP1572962.
JD253474 - Sequence 234498 from Patent EP1572962.
JD235516 - Sequence 216540 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-6030 - serotonin and melatonin biosynthesis
PWY66-401 - superpathway of L-tryptophan utilization

Reactome (by CSHL, EBI, and GO)

Protein Q16613 (Reactome details) participates in the following event(s):

R-HSA-209792 N-acetylation of serotonin
R-HSA-209931 Serotonin and melatonin biosynthesis
R-HSA-209776 Amine-derived hormones
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A0AVF2, ENST00000392492.1, ENST00000392492.2, ENST00000392492.3, ENST00000392492.4, ENST00000392492.5, ENST00000392492.6, ENST00000392492.7, J3KMZ5, NR_110548, Q16613, Q562F4, SNAT, SNAT_HUMAN, uc318vde.1, uc318vde.2
UCSC ID: ENST00000392492.8_6
RefSeq Accession: NM_001088.3
Protein: Q16613 (aka SNAT_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.